Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00018  |
| T6SS type | Type i2 |
| Strain | Yersinia pestis CO92 |
| Replicon (RefSeq) | chromosome (NC_003143) |
| Location | 1067376..1092013 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagL | TssB | TssC | TssD | TssH | TssI | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPO_RS05750 | 1064254..1064562 | - | 309 | pseudogene | site-specific integrase | ||
| YPO_RS05755 | 1064586..1065221 | - | 636 | WP_002210005.1 | DUF2345 domain-containing protein | ||
| YPO_RS05760 | 1065829..1066526 | - | 698 | WP_086016632.1 | IS1 family transposase | ||
| YPO_RS05765 | 1066622..1067389 | - | 768 | WP_002210008.1 | hypothetical protein | ||
| YPO_RS05770 | 1067376..1069673 | - | 2298 | WP_002210009.1 | M23 family metallopeptidase | ||
| YPO_RS05775 | 1069689..1070324 | - | 636 | WP_002210010.1 | DUF2345 domain-containing protein | ||
| YPO_RS05780 | 1070947..1071520 | - | 574 | pseudogene | IS1 family transposase | ||
| YPO_RS05785 | 1071549..1071743 | - | 195 | WP_002216110.1 | hypothetical protein | ||
| YPO_RS05790 | 1071907..1072254 | - | 348 | WP_016590715.1 | hypothetical protein | ||
| YPO_RS05795 | 1072398..1074620 | - | 2223 | WP_002210011.1 | M23 family metallopeptidase | ||
| T6CP000137 | TssI | YPO_RS05800 | 1074635..1076983 | - | 2349 | WP_002210012.1 | type VI secretion system tip protein VgrG |
| T6CP000138 | TssH | YPO_RS05805 (tssH) | 1076980..1079628 | - | 2649 | WP_002210013.1 | type VI secretion system ATPase TssH |
| T6CP008411 | TssD | YPO_RS05810 | 1080046..1080537 | - | 492 | WP_002210014.1 | Hcp family type VI secretion system effector |
| T6CP011406 | TagL | YPO_RS05815 | 1080541..1082277 | - | 1737 | WP_002228049.1 | OmpA family protein |
| T6CP009288 | TssL | YPO_RS05820 | 1082277..1082963 | - | 687 | WP_002210015.1 | type VI secretion system protein TssL, short form |
| T6CP000139 | TssK | YPO_RS05825 (tssK) | 1082960..1084312 | - | 1353 | WP_002211664.1 | type VI secretion system baseplate subunit TssK |
| T6CP000140 | TssC | YPO_RS05830 (tssC) | 1084324..1085868 | - | 1545 | WP_002215896.1 | type VI secretion system contractile sheath large subunit |
| T6CP000141 | TssB | YPO_RS05835 (tssB) | 1085911..1086411 | - | 501 | WP_002211662.1 | type VI secretion system contractile sheath small subunit |
| YPO_RS05840 | 1088261..1088619 | - | 359 | pseudogene | IS1 family transposase | ||
| YPO_RS05845 | 1088687..1089082 | - | 396 | WP_002215900.1 | lipoprotein | ||
| YPO_RS05850 | 1089533..1090183 | - | 651 | WP_002215902.1 | CPBP family intramembrane metalloprotease | ||
| YPO_RS05855 | 1091363..1092013 | + | 651 | WP_002215903.1 | acyl-homoserine-lactone synthase | ||
| YPO_RS05860 | 1091994..1092737 | - | 744 | WP_002211655.1 | LuxR family transcriptional regulator | ||
| YPO_RS05865 | 1093299..1094675 | + | 1377 | WP_002211654.1 | peptidase | ||
| YPO_RS05870 | 1095052..1095885 | + | 834 | WP_002211652.1 | intradiol ring-cleavage dioxygenase | ||
| YPO_RS05875 | 1096033..1096227 | - | 195 | WP_002228661.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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