Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00018  |
| T6SS type | Type i2 |
| Strain | Yersinia pestis CO92 |
| Replicon (RefSeq) | chromosome (NC_003143) |
| Location | 1067376..1092013 |
| Function | - |
| Comment | - |
| References | [1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagL | TssB | TssC | TssD | TssH | TssI | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPO_RS05750 | 1064254..1064562 | - | 309 | pseudogene | site-specific integrase | ||
| YPO_RS05755 | 1064586..1065221 | - | 636 | WP_002210005.1 | DUF2345 domain-containing protein | ||
| YPO_RS05760 | 1065829..1066526 | - | 698 | WP_086016632.1 | IS1 family transposase | ||
| YPO_RS05765 | 1066622..1067389 | - | 768 | WP_002210008.1 | hypothetical protein | ||
| YPO_RS05770 | 1067376..1069673 | - | 2298 | WP_002210009.1 | M23 family metallopeptidase | ||
| YPO_RS05775 | 1069689..1070324 | - | 636 | WP_002210010.1 | DUF2345 domain-containing protein | ||
| YPO_RS05780 | 1070947..1071520 | - | 574 | pseudogene | IS1 family transposase | ||
| YPO_RS05785 | 1071549..1071743 | - | 195 | WP_002216110.1 | hypothetical protein | ||
| YPO_RS05790 | 1071907..1072254 | - | 348 | WP_016590715.1 | hypothetical protein | ||
| YPO_RS05795 | 1072398..1074620 | - | 2223 | WP_002210011.1 | M23 family metallopeptidase |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||