Detailed information of component protein


Summary

Component ID T6CP000137
Component protein type TssI
T6SS ID (Type) T6SS00018 insolico (Type i2)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (783 a.a.); Nucleotide sequence (2349 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPO_RS05800
Coordinate (Strand) 1074635..1076983 (-)
NCBI ID WP_002210012.1
RefSeq NC_003143
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4.1e-60 34..355
DUF2345 PF10106.11 4e-51 611..751
T6SS_Vgr PF13296.8 1.8e-34 492..592
Phage_base_V PF04717.14 1.4e-09 406..472
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-782 MNTTLPTLRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMHDASLTLAAPMAEAFGVTVQQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPRREQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVVEKSVSTGDYNYRTATADMTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVANAAALSPGQELKVTGNDVPAQFGKGVIVTRITSHARRDRSYEVHFEAIPYSEEYCFRPILINKPKMAGTLPARVTSTTVNDTYGHIDKDGRYRVNLMFDRDSWEQGYESLWVRQARPYAGDSYGLHLPLLAGTEVAIAFEDGNPDRPYIASVLHDSAHGDHVTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAEKGIFISADGQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASPANLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQLSASENLIATAGKNADVSVGKNFFIGVGNTLSVFVRKLGIKLIANQGRITVQAQNDLMELLARKAITITSTEDEIKITAKKKITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRQEKANKPEDFPSVAPETTEPTSHFTFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9886 - -


  Protein sequence: 783 a.a.    

>T6CP000137 NC_003143:c1076983-1074635 [Yersinia pestis CO92] [TssI]
MNTTLPTLRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMHDASLTLAAPMAEAFGVTV
QQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPR
REQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVV
EKSVSTGDYNYRTATADMTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVAN
AAALSPGQELKVTGNDVPAQFGKGVIVTRITSHARRDRSYEVHFEAIPYSEEYCFRPILINKPKMAGTLPARVTSTTVND
TYGHIDKDGRYRVNLMFDRDSWEQGYESLWVRQARPYAGDSYGLHLPLLAGTEVAIAFEDGNPDRPYIASVLHDSAHGDH
VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAEKGIFISAD
GQAKAQGQVLEMQPAISLLKSAQEQMEAISADAQTATASPANLQVQISLLQQNLTELKQAVLLLSAPKGIALSSGEHLQL
SASENLIATAGKNADVSVGKNFFIGVGNTLSVFVRKLGIKLIANQGRITVQAQNDLMELLARKAITITSTEDEIKITAKK
KITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRQEKANKPEDFPSVAPETTEPTSHFTFS*

  Nucleotide sequence: 2349 bp    

>T6CP000137 NC_003143:c1076983-1074635 [Yersinia pestis CO92] [TssI]
ATGAATACCACTCTCCCGACTCTTCGGTTTGACCATAGCCACCACAAACTGGTGGTCCGCGACAGCACCGCCGCCGTTGA
TGTGCTGGGCTTTGAAGGCCACGAAAGCCTGAGCCAGCCGTTCTGTTACGACATCCAATTCACCAGCGCCGACAAGGCGA
TTGACCCGGCGACCATGCTGATGCACGACGCGTCACTGACATTGGCGGCCCCGATGGCCGAAGCTTTTGGCGTGACGGTT
CAGCAGACCCAGCGGGTGATCCAAGGGGTGGTGACCGGATTTAAACGCCTGTCGGCCTCGAAAGAGGAATGCCGCTACGA
ACTGAGCCTGCAACCGCGCCTGGCCTTGTTGTCGCGCAGCCATCAGAACGGGATATATCAGGACATGTCGGTGCCGCAGA
TTGTGGAAAAAATTCTGCGTGAGCGCCATGACATGCGCGGTCAGGATTTTGTCTTCACGCTGGCCCGCGAGTACCCACGC
CGCGAGCAGGTAATGCAATACGGCGAGGATGACCTGACCTTTATCCGCCGCCTGCTGGCCGAGGTGGGGATCTGGTTTCG
TTTTACCGCCGATCCCAAACTCAATATTGATGTGGTGGAGTTTTACGACGACCAGCGCTTCTATCAGCAAGGACTGACGC
TACAGGCGGTGCCGCCTTCGGGGATGCACGACAGCGGGATGGAGTCGGTCTGGGACTTGTCCAGTGCTCATCAGGTGGTT
GAAAAATCGGTCAGTACCGGCGATTACAACTACCGCACCGCCACTGCCGATATGACGGCCGGGGCAGACATCACTCGGGG
TGATACCACCACCTACGGCGAAGCTTATCATTACGCCGATAACTACCTGACCGCAGGCAGTGAAGGGCGCGAGCCGGAAA
GTGAAAGCGGGGCCTTTTATGCCCGTCTGCGCCATGAACGTTACCTCAATAATCAGGCGCGCTTCGCCGGGGTGGCCAAT
GCGGCGGCACTGTCACCGGGTCAGGAACTGAAAGTCACCGGCAACGACGTGCCAGCACAGTTTGGCAAAGGGGTGATAGT
CACCCGCATCACCAGCCACGCCCGCCGCGACCGCAGCTATGAAGTGCATTTTGAGGCCATCCCTTACTCCGAAGAGTATT
GCTTCCGCCCGATCCTCATCAACAAGCCAAAAATGGCCGGCACCTTGCCCGCACGGGTCACCAGCACCACGGTGAACGAC
ACTTACGGACACATCGACAAAGACGGCCGCTACCGTGTCAATCTGATGTTTGACCGGGACAGTTGGGAGCAAGGTTACGA
AAGCCTGTGGGTCCGTCAGGCCCGCCCGTATGCGGGTGACAGCTACGGCCTGCACCTGCCGCTGCTGGCCGGCACCGAAG
TGGCGATTGCATTTGAGGACGGCAACCCGGACCGGCCGTATATCGCCTCTGTGCTGCACGACTCGGCGCACGGCGACCAC
GTCACCATCAGCAACTACAAACGCAACGTACTGCGCACTCCGTCGAACAACAAACTGCGCCTGGAGGATGAACGGGGCAA
AGAGCACATCAAGCTCAGCACCGAATACGGCGGCAAAAGCCAGTTGAATCTGGGGCATCTGGTCGATAACGAGAAACAGC
CTCGGGGTGAGGGTTTTGAGCTGCGCACCGACAGTTTTGGTGCCTTGCGGGCAGAAAAAGGGATTTTCATCAGCGCTGAC
GGCCAGGCGAAGGCACAGGGGCAGGTGCTGGAGATGCAACCGGCTATCAGCCTGTTGAAAAGTGCGCAGGAACAGATGGA
GGCCATCTCCGCGGATGCACAAACCGCCACCGCCAGTCCGGCCAACCTACAGGTACAAATCAGTCTGTTGCAGCAAAATC
TCACTGAACTGAAACAAGCTGTCCTGTTACTGAGTGCGCCAAAGGGGATCGCGTTGAGCAGTGGCGAACATTTACAACTG
TCGGCCAGCGAAAATCTGATAGCCACTGCCGGTAAGAATGCGGATGTCAGTGTAGGTAAGAATTTTTTTATCGGTGTGGG
CAACACGCTGAGCGTATTTGTACGCAAGCTGGGGATAAAGTTGATAGCGAATCAGGGACGAATAACGGTACAGGCCCAGA
ATGATCTGATGGAGTTATTGGCGCGTAAAGCGATCACGATCACCAGCACCGAGGATGAGATAAAAATCACCGCCAAGAAG
AAGATCACGCTGAATGCGGGAGGCAGTTATATCACGCTGGATGAGAACCGGATCGAGTCAGGAACGGCGGGGGAATATTT
GACCAAAGCAGGGTATTACGGGCGACAGGAAAAGGCAAATAAACCAGAAGATTTTCCGAGTGTTGCCCCGGAAACAACAG
AACCCACCAGTCATTTCACTTTTTCCTGA