Detailed information of effector
Summary
| Effector ID | EFF76652  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS17508 (Type i3) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Description | In the presence of E. coli as prey, the relative gene expression level of only tssD1 was increased whereas the relative gene expression levels of the tssD2, tssD4, and tssD5 genes showed little difference regardless of the presence of prey |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | BGLU_RS18660 |
| Coordinates (Strand) | 159409..159891 (+) |
| NCBI ID | WP_012733029.1 |
| RefSeq | NC_012721 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 2.2e-40 | 6..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-160 | MAQDIFLKLNGIDGESEDASHKNEIDVLSWSWNVSQQSNMHVGSGGGAGRATVDDLTFEHFIDRSTPNLTQYCLTGKHIDEARLVVRKAGGNPLEYLKLTMNDVLVTSVHPSGVSESESRPREVVSLSFSRMKQEYVVQNAQGGSGGAITATFDIKKNSA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9818 | - | - |
Protein sequence: 161 a.a. .
>EFF76652 NC_012721:159409-159891 (Unknown) [Burkholderia glumae BGR1]
MAQDIFLKLNGIDGESEDASHKNEIDVLSWSWNVSQQSNMHVGSGGGAGRATVDDLTFEHFIDRSTPNLTQYCLTGKHID
EARLVVRKAGGNPLEYLKLTMNDVLVTSVHPSGVSESESRPREVVSLSFSRMKQEYVVQNAQGGSGGAITATFDIKKNSA
*
MAQDIFLKLNGIDGESEDASHKNEIDVLSWSWNVSQQSNMHVGSGGGAGRATVDDLTFEHFIDRSTPNLTQYCLTGKHID
EARLVVRKAGGNPLEYLKLTMNDVLVTSVHPSGVSESESRPREVVSLSFSRMKQEYVVQNAQGGSGGAITATFDIKKNSA
*
Nucleotide sequence: 483 bp .
>EFF76652 NC_012721:159409-159891 (Unknown) [Burkholderia glumae BGR1]
ATGGCACAAGACATCTTTCTCAAACTCAACGGGATCGATGGTGAGTCGGAGGACGCCAGCCACAAGAATGAAATCGACGT
TCTTAGCTGGTCGTGGAATGTCTCGCAGCAGTCGAACATGCACGTCGGTTCCGGAGGCGGTGCGGGTCGGGCGACCGTTG
ACGACCTCACCTTCGAGCACTTCATCGACCGTTCGACGCCGAACCTCACGCAGTACTGCCTGACGGGCAAGCACATCGAC
GAGGCCAGGCTCGTCGTGCGCAAGGCAGGCGGCAACCCGCTCGAATACCTCAAGCTGACCATGAACGACGTGCTGGTCAC
TTCGGTGCACCCGTCTGGCGTGAGCGAAAGCGAATCGCGACCGCGTGAAGTGGTGTCGCTTTCGTTCTCGCGCATGAAGC
AGGAGTACGTCGTGCAGAATGCGCAAGGCGGCAGCGGCGGGGCGATCACGGCCACCTTCGACATCAAGAAGAACAGCGCC
TGA
ATGGCACAAGACATCTTTCTCAAACTCAACGGGATCGATGGTGAGTCGGAGGACGCCAGCCACAAGAATGAAATCGACGT
TCTTAGCTGGTCGTGGAATGTCTCGCAGCAGTCGAACATGCACGTCGGTTCCGGAGGCGGTGCGGGTCGGGCGACCGTTG
ACGACCTCACCTTCGAGCACTTCATCGACCGTTCGACGCCGAACCTCACGCAGTACTGCCTGACGGGCAAGCACATCGAC
GAGGCCAGGCTCGTCGTGCGCAAGGCAGGCGGCAACCCGCTCGAATACCTCAAGCTGACCATGAACGACGTGCTGGTCAC
TTCGGTGCACCCGTCTGGCGTGAGCGAAAGCGAATCGCGACCGCGTGAAGTGGTGTCGCTTTCGTTCTCGCGCATGAAGC
AGGAGTACGTCGTGCAGAATGCGCAAGGCGGCAGCGGCGGGGCGATCACGGCCACCTTCGACATCAAGAAGAACAGCGCC
TGA