Detailed information of effector


Summary

Effector ID EFF76645 experimental
Effector type Tge
Cognate immunity protein IMU38218 experimental
Related T6SS (Type) T6SS01213 experimental (Type i3)
Strain Pseudomonas aeruginosa PAK
Replicon chromosome
Sequence Protein sequence (409 a.a.); Nucleotide sequence (1227 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) Y880_RS15550 (tse3)
Coordinates (Strand) 3243308..3244534 (+)
NCBI ID WP_003092026.1
RefSeq NZ_CP020659
Uniprot ID V6AC15_PSEAI, A0A1F0IEA8_9PSED, TSE3_PSEAE, A0A072ZQW5_PSEAI
KEGG ID pae:PA3484
PDB ID 4N88, 3WA5, 4LUQ, 4N7S, 4N80, 4M5E, 4M5F
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-408 MTATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASIAGRTTMQRYQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPFSGVGATGVNPTDLPSIAFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPDAYPGNPPSRAKVMSAAARKYDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLSRKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALASEYTSRPWDDNLSPGWPMFVDDAYATFLDPGMRFP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9937 - -


  Protein sequence: 409 a.a.    .

>EFF76645 NZ_CP020659:3243308-3244534 Type VI Glycoside hydrolase Effector (Tge) [Pseudomonas aeruginosa PAK]
MTATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASIAGRTTMQR
YQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPFSGVGATGVNPTDLPSI
AFGDQLKLLNKDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPDAYPGNPPSRAKVMSAAARKYDLTP
QLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLSRKAVATLLASDEFNI
FATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALASEYTSRPWDDNLSPGWPMFVDDAYATF
LDPGMRFP*

  Nucleotide sequence: 1227 bp    .

>EFF76645 NZ_CP020659:3243308-3244534 Type VI Glycoside hydrolase Effector (Tge) [Pseudomonas aeruginosa PAK]
ATGACCGCCACCAGCGACCTGATCGAGTCACTGATTTCCTATAGCTGGGACGACTGGCAGGTGACCCGCCAGGAAGCCCG
CCGGGTGATCGCCGCGATCCGCAACGACAACGTGCCCGATGCGACCATCGCCGCACTCGACAAGAGCGGCTCGCTGATCA
AGCTGTTCCAGCGGGTGGGCCCGCCGGAACTGGCGCGCTCGCTGATCGCCAGCATCGCCGGGCGCACCACCATGCAGCGC
TACCAGGCACGCAATGCCTTGATCCGCAGCCTGATCAACAATCCCCTGGGCACCCAGACCGACAACTGGATCTACTTCCC
CACCATCACCTTCTTCGACATCTGCGCCGACCTCGCCGACGCCGCCGGTCGCCTGGGCTTCGCCGCGGCGGGAGCCACCG
GGGTGGCCAGCCAGGCGATCCAGGGTCCGTTCAGCGGGGTCGGCGCCACCGGCGTCAATCCGACCGACCTGCCGTCCATT
GCCTTCGGCGACCAGCTCAAGCTGCTCAACAAGGACCCGGCGACCGTCACCAAGTACAGCAACCCGCTCGGCGACCTGGG
CGCCTACCTGAGCCAGCTGTCGCCGCAAGACAAGCTGAACCAGGCACAGACGCTGGTCGGCCAGCCGATCAGCACGCTGT
TCCCCGACGCCTATCCGGGCAACCCGCCGTCGCGGGCCAAGGTCATGTCCGCGGCCGCGCGCAAGTACGACCTGACGCCG
CAACTGATCGGCGCGATCATCCTCGCCGAGCAGCGTGACCAGACCCGCGACGAAGACGCCAAGGACTATCAGGCGGCAGT
CAGCATCAAGAGCGCCAACACCTCCATCGGCCTCGGCCAGGTAGTGGTCTCCACCGCGATCAAGTACGAGCTGTTCACCG
ACCTGCTCGGCCAGCCGGTGCGCCGCGGCCTGTCGCGCAAGGCGGTCGCCACCCTGCTGGCTTCCGACGAATTCAACATC
TTCGCCACCGCCCGTTACATCCGCTACGTCGCCAACCTCGCGTCGCAACAGGACCTGCGCAAGCTGCCGAAGACCCGCGG
CGCATTTCCCTCCATCGATCTCCGCGCCTACGCCGGCAATCCGCGCAACTGGCCGCGGGACAATGTCCGCGCGCTGGCCT
CGGAATACACCTCGCGGCCCTGGGACGACAACCTGTCGCCGGGCTGGCCGATGTTCGTCGACGATGCCTACGCCACCTTC
CTCGACCCTGGAATGAGGTTCCCATGA