Detailed information of effector
Summary
| Effector ID | EFF76636  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00126 (Type i4b) |
| Strain | Burkholderia cenocepacia AU 1054 |
| Replicon | chromosome |
| Sequence | Protein sequence (160 a.a.); Nucleotide sequence (480 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | BCEN_RS18170 (tecA) |
| Coordinates (Strand) | 779302..779781 (+) |
| NCBI ID | WP_011547418.1 |
| RefSeq | NC_008061 |
| Uniprot ID | A0A0H2XWD3_BURCA, A0A3N9FAY4_9BURK |
| KEGG ID | bcn:Bcen_3653 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-159 | VQLTQLGGHVAQSGIAERQKHAQALMFGMANIDEYVSGGVCYDAAAYVRYLLRADAMIAPGTLLDTIGQLWKTRFNFETGNQWDGRASIPAGTAVGFARGTNVFHAAIAVGGTRIRGINGGLLGAGWLHPVDLARVLQPDPAGGFAYDRTTIRVYLSRL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9701 | - | - |
Protein sequence: 160 a.a. .
>EFF76636 NC_008061:779302-779781 (Unknown) [Burkholderia cenocepacia AU 1054]
VQLTQLGGHVAQSGIAERQKHAQALMFGMANIDEYVSGGVCYDAAAYVRYLLRADAMIAPGTLLDTIGQLWKTRFNFETG
NQWDGRASIPAGTAVGFARGTNVFHAAIAVGGTRIRGINGGLLGAGWLHPVDLARVLQPDPAGGFAYDRTTIRVYLSRL*
VQLTQLGGHVAQSGIAERQKHAQALMFGMANIDEYVSGGVCYDAAAYVRYLLRADAMIAPGTLLDTIGQLWKTRFNFETG
NQWDGRASIPAGTAVGFARGTNVFHAAIAVGGTRIRGINGGLLGAGWLHPVDLARVLQPDPAGGFAYDRTTIRVYLSRL*
Nucleotide sequence: 480 bp .
>EFF76636 NC_008061:779302-779781 (Unknown) [Burkholderia cenocepacia AU 1054]
GTGCAACTCACCCAGTTAGGCGGGCATGTCGCCCAATCCGGCATCGCCGAACGGCAAAAACACGCGCAGGCGCTGATGTT
CGGGATGGCGAACATCGACGAGTACGTGTCCGGCGGCGTCTGCTACGACGCCGCTGCTTATGTCCGCTATCTGCTGCGCG
CCGACGCGATGATCGCGCCCGGTACGTTGCTCGACACGATCGGCCAGCTGTGGAAGACGCGCTTCAACTTCGAGACCGGC
AATCAGTGGGACGGGCGCGCGAGCATTCCGGCGGGCACCGCGGTCGGCTTCGCGCGGGGCACCAATGTCTTTCACGCCGC
GATCGCCGTCGGCGGCACCCGGATTCGCGGGATCAACGGCGGCCTGCTGGGCGCCGGATGGCTGCATCCGGTCGATCTCG
CACGCGTGCTGCAGCCGGACCCGGCCGGCGGCTTTGCGTACGACCGCACGACCATTCGCGTCTATCTGTCGCGTCTGTAG
GTGCAACTCACCCAGTTAGGCGGGCATGTCGCCCAATCCGGCATCGCCGAACGGCAAAAACACGCGCAGGCGCTGATGTT
CGGGATGGCGAACATCGACGAGTACGTGTCCGGCGGCGTCTGCTACGACGCCGCTGCTTATGTCCGCTATCTGCTGCGCG
CCGACGCGATGATCGCGCCCGGTACGTTGCTCGACACGATCGGCCAGCTGTGGAAGACGCGCTTCAACTTCGAGACCGGC
AATCAGTGGGACGGGCGCGCGAGCATTCCGGCGGGCACCGCGGTCGGCTTCGCGCGGGGCACCAATGTCTTTCACGCCGC
GATCGCCGTCGGCGGCACCCGGATTCGCGGGATCAACGGCGGCCTGCTGGGCGCCGGATGGCTGCATCCGGTCGATCTCG
CACGCGTGCTGCAGCCGGACCCGGCCGGCGGCTTTGCGTACGACCGCACGACCATTCGCGTCTATCTGTCGCGTCTGTAG