Detailed information of effector
Summary
Effector ID | EFF01893 ![]() |
Effector type | Tse |
Cognate immunity protein | - |
Related T6SS (Type) | T6SS00005 ![]() |
Strain | Pseudomonas aeruginosa PAO1 |
Replicon | chromosome |
Sequence | Protein sequence (301 a.a.); Nucleotide sequence (903 bp) |
Description | Copurification experiments validated the interaction between PA2066 and Hcp2 (10-fold enrichment),PA0256 and Hcp3 (8.4-fold enrichment). PA2066 and PA0256 are bona fide Hcp cargoes and might be H2- and H3-T6SS toxins with antibacterial activity, respectively |
Reference |


External database links
Locus tag (Gene) | PA2056 |
Coordinates (Strand) | 2249693..2250595 (+) |
NCBI ID | 15597252 |
RefSeq | NC_002516 |
Uniprot ID | Q9I259_PSEAE |
KEGG ID | pae:PA2056 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
LysR_substrate | PF03466.22 | 2e-31 | 89..291 |
HTH_1 | PF00126.29 | 2.2e-20 | 3..62 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-300 | MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPDGQLFYERCAPLLAELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRCYPQLQIEAAMTDRLVDLTEEGFDAAVRLGRVGDVRLIARPLAALRWVTVASPEYLRGHGTPERLEQLAGHNCPTVRDLHTGKLLEWQFQRDGQPLSLAVRGDLVLDVADALVDAALVGQGIVQVMGFMAEEAIRRRRLVRILQPFEPPLCPVSLIYPPSRQCSLKIGALYEELKSAHWCGALTY |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
TAT(Tat/SPI) | 0.7867 | pos: 35-36. SRA-IG. | MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRA |
Protein sequence: 301 a.a. .
>EFF01893 NC_002516:2249693-2250595 [Pseudomonas aeruginosa PAO1]
MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPDGQLFYERCAPLLAELEEVEK
LLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRCYPQLQIEAAMTDRLVDLTEEGFDAAVRLGRVGDVRLIARPLAAL
RWVTVASPEYLRGHGTPERLEQLAGHNCPTVRDLHTGKLLEWQFQRDGQPLSLAVRGDLVLDVADALVDAALVGQGIVQV
MGFMAEEAIRRRRLVRILQPFEPPLCPVSLIYPPSRQCSLKIGALYEELKSAHWCGALTY*
MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPDGQLFYERCAPLLAELEEVEK
LLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRCYPQLQIEAAMTDRLVDLTEEGFDAAVRLGRVGDVRLIARPLAAL
RWVTVASPEYLRGHGTPERLEQLAGHNCPTVRDLHTGKLLEWQFQRDGQPLSLAVRGDLVLDVADALVDAALVGQGIVQV
MGFMAEEAIRRRRLVRILQPFEPPLCPVSLIYPPSRQCSLKIGALYEELKSAHWCGALTY*
Nucleotide sequence: 903 bp .
>EFF01893 NC_002516:2249693-2250595 [Pseudomonas aeruginosa PAO1]
ATGGACCTGAATGCCGTCAAGTTGCTCGCCCGCGTGGCCGAGACCCGTAGCTTCACCCAGGCCGCCGTTTCTCTCGGTCT
GACCCAGTCCGGCCTGTCGCGCGCCATCGGCCGGCTGGAAGCCGAACTCGGCGTGCGTCTGCTGCACCGCACCACCCGCA
GCGTCAGCCTGACCCCGGACGGCCAGCTGTTCTACGAGCGCTGCGCACCCTTGCTGGCGGAACTGGAGGAAGTCGAGAAG
TTGCTGGTGGACCGCCAGTGCGCGCCGAGCGGTCCGCTGAAGATCACCACCCCGCAGGCGCTCGGGCGGATCGTGATCAT
GCCGGTGCTGCGCGAACTGACGCGGTGCTACCCGCAATTGCAGATCGAGGCGGCGATGACCGATCGCCTGGTCGACCTCA
CCGAGGAAGGCTTCGACGCCGCCGTGCGTCTCGGTCGGGTCGGCGACGTGCGCCTGATCGCCCGGCCATTGGCGGCGTTG
CGCTGGGTCACGGTGGCGTCGCCGGAATACCTGCGTGGCCACGGCACGCCGGAGCGCCTGGAGCAACTCGCCGGGCACAA
CTGCCCGACGGTGCGCGACCTGCATACCGGCAAGCTGCTGGAATGGCAGTTCCAGCGCGACGGCCAGCCGCTGAGCCTGG
CGGTGCGCGGCGACCTGGTGCTGGACGTGGCCGACGCGCTGGTCGACGCGGCGCTGGTCGGCCAGGGCATCGTCCAGGTG
ATGGGCTTCATGGCCGAGGAGGCGATCCGCCGGCGTCGACTGGTACGCATCCTCCAGCCGTTCGAACCGCCGCTGTGCCC
GGTGTCGCTGATCTACCCGCCGTCGCGGCAGTGCTCGCTGAAGATCGGCGCGCTCTACGAGGAACTGAAGAGCGCGCACT
GGTGCGGGGCGCTGACGTACTGA
ATGGACCTGAATGCCGTCAAGTTGCTCGCCCGCGTGGCCGAGACCCGTAGCTTCACCCAGGCCGCCGTTTCTCTCGGTCT
GACCCAGTCCGGCCTGTCGCGCGCCATCGGCCGGCTGGAAGCCGAACTCGGCGTGCGTCTGCTGCACCGCACCACCCGCA
GCGTCAGCCTGACCCCGGACGGCCAGCTGTTCTACGAGCGCTGCGCACCCTTGCTGGCGGAACTGGAGGAAGTCGAGAAG
TTGCTGGTGGACCGCCAGTGCGCGCCGAGCGGTCCGCTGAAGATCACCACCCCGCAGGCGCTCGGGCGGATCGTGATCAT
GCCGGTGCTGCGCGAACTGACGCGGTGCTACCCGCAATTGCAGATCGAGGCGGCGATGACCGATCGCCTGGTCGACCTCA
CCGAGGAAGGCTTCGACGCCGCCGTGCGTCTCGGTCGGGTCGGCGACGTGCGCCTGATCGCCCGGCCATTGGCGGCGTTG
CGCTGGGTCACGGTGGCGTCGCCGGAATACCTGCGTGGCCACGGCACGCCGGAGCGCCTGGAGCAACTCGCCGGGCACAA
CTGCCCGACGGTGCGCGACCTGCATACCGGCAAGCTGCTGGAATGGCAGTTCCAGCGCGACGGCCAGCCGCTGAGCCTGG
CGGTGCGCGGCGACCTGGTGCTGGACGTGGCCGACGCGCTGGTCGACGCGGCGCTGGTCGGCCAGGGCATCGTCCAGGTG
ATGGGCTTCATGGCCGAGGAGGCGATCCGCCGGCGTCGACTGGTACGCATCCTCCAGCCGTTCGAACCGCCGCTGTGCCC
GGTGTCGCTGATCTACCCGCCGTCGCGGCAGTGCTCGCTGAAGATCGGCGCGCTCTACGAGGAACTGAAGAGCGCGCACT
GGTGCGGGGCGCTGACGTACTGA