Detailed information of effector
Summary
| Effector ID | EFF01887  |
| Effector type | Tse |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00791 (Type i4b) |
| Strain | Edwardsiella tarda PPD130/91 |
| Replicon | chromosome |
| Sequence | Protein sequence (174 a.a.); Nucleotide sequence (522 bp) |
| Description | EvpQ is secreted at a T6SS-Dependent manner and facilitates the replication of E. piscicida in blue Gourami Infection Model. |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | Y113_RS08110 (EvpQ) |
| Coordinates (Strand) | 41196..41717 (-) |
| NCBI ID | 502611890 |
| RefSeq | NZ_JACQ01000015 |
| Uniprot ID | D0Z8X5_EDWTE |
| KEGG ID | etr:ETAE_2037 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-173 | MDFFYKVEMFNQWRPGVGGVIDLNCGWYCQDALLKWYCKKNYLPSDIFTKTAKCNRMSFGFDPEESFCQKINIINKPEKYKEELLRHGPIIAAIKSRIPGLNLGHYVLIVGVRVKQNEIIIYNPLSINLHSVRKSKPTVMKFKQFMAILEGTLILNQFSVNCAMKMQPLLEPN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9325 | - | - |
Protein sequence: 174 a.a. .
>EFF01887 NZ_JACQ01000015:c41717-41196 Type VI Secretion System Effector (Tse) [Edwardsiella tarda PPD130/91]
MDFFYKVEMFNQWRPGVGGVIDLNCGWYCQDALLKWYCKKNYLPSDIFTKTAKCNRMSFGFDPEESFCQKINIINKPEKY
KEELLRHGPIIAAIKSRIPGLNLGHYVLIVGVRVKQNEIIIYNPLSINLHSVRKSKPTVMKFKQFMAILEGTLILNQFSV
NCAMKMQPLLEPN*
MDFFYKVEMFNQWRPGVGGVIDLNCGWYCQDALLKWYCKKNYLPSDIFTKTAKCNRMSFGFDPEESFCQKINIINKPEKY
KEELLRHGPIIAAIKSRIPGLNLGHYVLIVGVRVKQNEIIIYNPLSINLHSVRKSKPTVMKFKQFMAILEGTLILNQFSV
NCAMKMQPLLEPN*
Nucleotide sequence: 522 bp .
>EFF01887 NZ_JACQ01000015:c41717-41196 Type VI Secretion System Effector (Tse) [Edwardsiella tarda PPD130/91]
ATGGATTTTTTCTACAAGGTAGAGATGTTTAACCAATGGAGACCTGGCGTCGGTGGCGTTATTGATCTTAACTGCGGGTG
GTATTGCCAAGATGCGTTGTTAAAATGGTATTGCAAAAAAAACTACTTGCCAAGTGATATCTTCACCAAGACTGCAAAGT
GTAATAGGATGAGCTTCGGCTTTGATCCGGAGGAAAGCTTTTGCCAAAAGATTAACATCATTAATAAGCCAGAAAAATAT
AAAGAAGAGTTACTGCGCCACGGACCCATTATTGCCGCTATAAAGTCAAGAATACCGGGGTTAAACCTTGGGCATTATGT
GCTAATCGTCGGGGTTAGAGTTAAGCAGAATGAGATTATCATATATAACCCGCTAAGTATAAATCTACATAGCGTTAGAA
AATCGAAGCCAACGGTAATGAAGTTTAAACAGTTCATGGCGATCTTGGAAGGCACACTAATCCTTAATCAATTCTCCGTA
AACTGCGCAATGAAAATGCAACCATTGCTTGAGCCAAATTAA
ATGGATTTTTTCTACAAGGTAGAGATGTTTAACCAATGGAGACCTGGCGTCGGTGGCGTTATTGATCTTAACTGCGGGTG
GTATTGCCAAGATGCGTTGTTAAAATGGTATTGCAAAAAAAACTACTTGCCAAGTGATATCTTCACCAAGACTGCAAAGT
GTAATAGGATGAGCTTCGGCTTTGATCCGGAGGAAAGCTTTTGCCAAAAGATTAACATCATTAATAAGCCAGAAAAATAT
AAAGAAGAGTTACTGCGCCACGGACCCATTATTGCCGCTATAAAGTCAAGAATACCGGGGTTAAACCTTGGGCATTATGT
GCTAATCGTCGGGGTTAGAGTTAAGCAGAATGAGATTATCATATATAACCCGCTAAGTATAAATCTACATAGCGTTAGAA
AATCGAAGCCAACGGTAATGAAGTTTAAACAGTTCATGGCGATCTTGGAAGGCACACTAATCCTTAATCAATTCTCCGTA
AACTGCGCAATGAAAATGCAACCATTGCTTGAGCCAAATTAA