Detailed information of effector


Summary

Effector ID EFF01824 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00794 experimental (Type i5)
Strain Vibrio alginolyticus strain EPJS
Replicon chromosome
Sequence Protein sequence (160 a.a.); Nucleotide sequence (480 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) VEPGS_0623 (hcp2)
Coordinates (Strand) 27328..27807 (+)
NCBI ID 225382189
GenBank FJ790777
Uniprot ID C0LZR3_VIBAL
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.2e-28 6..133

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-159 MQSNTYLKYADIKGEATAEQYKDLITLLSVDWSVGREISSYTGTAMDREASATRLYDLTITKLQDRSSPDLFKEATIGKGKPAVFHITKQGEKVEEIMKIELTDAMISNYSVSIQDDRPVETITISYTEMMMTVTPTDDKNNTSAPLVYGYSGVKGQQM



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9833 - -



  Protein sequence: 160 a.a.    .

>EFF01824 FJ790777:27328-27807 [Vibrio alginolyticus]
MQSNTYLKYADIKGEATAEQYKDLITLLSVDWSVGREISSYTGTAMDREASATRLYDLTITKLQDRSSPDLFKEATIGKG
KPAVFHITKQGEKVEEIMKIELTDAMISNYSVSIQDDRPVETITISYTEMMMTVTPTDDKNNTSAPLVYGYSGVKGQQM*

  Nucleotide sequence: 480 bp    .

>EFF01824 FJ790777:27328-27807 [Vibrio alginolyticus]
ATGCAGTCTAATACGTATCTTAAATACGCAGATATTAAGGGTGAGGCAACAGCCGAGCAATACAAAGATTTGATTACACT
ACTATCTGTAGATTGGAGTGTAGGTCGTGAGATCTCATCATACACTGGTACAGCGATGGACCGTGAAGCGAGCGCTACTC
GTCTATATGATTTGACTATCACTAAACTTCAAGACCGTTCTTCTCCTGACTTATTTAAAGAAGCGACGATTGGTAAAGGT
AAACCAGCGGTTTTCCATATTACTAAGCAGGGTGAGAAGGTTGAAGAGATCATGAAGATCGAACTGACTGATGCGATGAT
TTCTAACTACTCAGTTTCTATCCAAGACGATCGTCCAGTTGAAACTATCACAATTTCTTACACAGAAATGATGATGACAG
TGACTCCTACTGACGATAAGAACAACACTTCTGCTCCATTGGTATACGGCTACAGTGGTGTTAAAGGTCAACAAATGTAA