Detailed information of effector
Summary
| Effector ID | EFF01824  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00794 (Type i5) |
| Strain | Vibrio alginolyticus strain EPJS |
| Replicon | chromosome |
| Sequence | Protein sequence (160 a.a.); Nucleotide sequence (480 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | VEPGS_0623 (hcp2) |
| Coordinates (Strand) | 27328..27807 (+) |
| NCBI ID | 225382189 |
| GenBank | FJ790777 |
| Uniprot ID | C0LZR3_VIBAL |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.2e-28 | 6..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-159 | MQSNTYLKYADIKGEATAEQYKDLITLLSVDWSVGREISSYTGTAMDREASATRLYDLTITKLQDRSSPDLFKEATIGKGKPAVFHITKQGEKVEEIMKIELTDAMISNYSVSIQDDRPVETITISYTEMMMTVTPTDDKNNTSAPLVYGYSGVKGQQM |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9833 | - | - |
Protein sequence: 160 a.a. .
>EFF01824 FJ790777:27328-27807 (Unknown) [Vibrio alginolyticus]
MQSNTYLKYADIKGEATAEQYKDLITLLSVDWSVGREISSYTGTAMDREASATRLYDLTITKLQDRSSPDLFKEATIGKG
KPAVFHITKQGEKVEEIMKIELTDAMISNYSVSIQDDRPVETITISYTEMMMTVTPTDDKNNTSAPLVYGYSGVKGQQM*
MQSNTYLKYADIKGEATAEQYKDLITLLSVDWSVGREISSYTGTAMDREASATRLYDLTITKLQDRSSPDLFKEATIGKG
KPAVFHITKQGEKVEEIMKIELTDAMISNYSVSIQDDRPVETITISYTEMMMTVTPTDDKNNTSAPLVYGYSGVKGQQM*
Nucleotide sequence: 480 bp .
>EFF01824 FJ790777:27328-27807 (Unknown) [Vibrio alginolyticus]
ATGCAGTCTAATACGTATCTTAAATACGCAGATATTAAGGGTGAGGCAACAGCCGAGCAATACAAAGATTTGATTACACT
ACTATCTGTAGATTGGAGTGTAGGTCGTGAGATCTCATCATACACTGGTACAGCGATGGACCGTGAAGCGAGCGCTACTC
GTCTATATGATTTGACTATCACTAAACTTCAAGACCGTTCTTCTCCTGACTTATTTAAAGAAGCGACGATTGGTAAAGGT
AAACCAGCGGTTTTCCATATTACTAAGCAGGGTGAGAAGGTTGAAGAGATCATGAAGATCGAACTGACTGATGCGATGAT
TTCTAACTACTCAGTTTCTATCCAAGACGATCGTCCAGTTGAAACTATCACAATTTCTTACACAGAAATGATGATGACAG
TGACTCCTACTGACGATAAGAACAACACTTCTGCTCCATTGGTATACGGCTACAGTGGTGTTAAAGGTCAACAAATGTAA
ATGCAGTCTAATACGTATCTTAAATACGCAGATATTAAGGGTGAGGCAACAGCCGAGCAATACAAAGATTTGATTACACT
ACTATCTGTAGATTGGAGTGTAGGTCGTGAGATCTCATCATACACTGGTACAGCGATGGACCGTGAAGCGAGCGCTACTC
GTCTATATGATTTGACTATCACTAAACTTCAAGACCGTTCTTCTCCTGACTTATTTAAAGAAGCGACGATTGGTAAAGGT
AAACCAGCGGTTTTCCATATTACTAAGCAGGGTGAGAAGGTTGAAGAGATCATGAAGATCGAACTGACTGATGCGATGAT
TTCTAACTACTCAGTTTCTATCCAAGACGATCGTCCAGTTGAAACTATCACAATTTCTTACACAGAAATGATGATGACAG
TGACTCCTACTGACGATAAGAACAACACTTCTGCTCCATTGGTATACGGCTACAGTGGTGTTAAAGGTCAACAAATGTAA