Detailed information of effector


Summary

Effector ID EFF01809 experimental
Effector type Tse
Cognate immunity protein IMU00378 experimental
Related T6SS (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (418 a.a.); Nucleotide sequence (1254 bp)
Description MXAN_RS08765 is involved in antifungal activity
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) MXAN_RS08765 (PAAR-CTD)
Coordinates (Strand) 2144359..2145612 (-)
NCBI ID 499871184
RefSeq NC_008095
Uniprot ID Q1DBB4_MYXXD
KEGG ID mxa:MXAN_1813
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF4150 PF13665.8 2.2e-17 22..126
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-417 MAKVTVNFPRTPVTKGSSGIAAATLPNVCKMPGPPAPFVPTPLPNIGNSGDAPEGYSKTVTINGHPVAIAGASFGSKGDMASKGTGGGLISSNTHGPTKFIGPGSMNVKIEGRNVQLLGDPMLNNCGPSGSPANAATMTGIIQASGVMTVIYGDDIPCSRCGKEHPLGAGEATQKAIATLFKRLQAALDKQKQQILEYAELDKEEYTKRSALAQLKKLNTPERRTAGKGLRPEQRAELERLPGELAALRAKLAPLRDFFKNKAVLRYTPNTNSYTKGYMIGAMVCTCATKKLVACSGHAPPGFWPAVKAAEFECVNSRVGAGAREEKWMCAAKQIMENHGGHKPKHLAERLFYPIVEGIKLERGPKIKFKIREEDINTKKLSEPKEREQVFKHGEDVPSCSECQEKLPAMYCKTICK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.5973 - -


  Protein sequence: 418 a.a.    .

>EFF01809 NC_008095:c2145612-2144359 Type VI Secretion System Effector (Tse) [Myxococcus xanthus DK 1622]
MAKVTVNFPRTPVTKGSSGIAAATLPNVCKMPGPPAPFVPTPLPNIGNSGDAPEGYSKTVTINGHPVAIAGASFGSKGDM
ASKGTGGGLISSNTHGPTKFIGPGSMNVKIEGRNVQLLGDPMLNNCGPSGSPANAATMTGIIQASGVMTVIYGDDIPCSR
CGKEHPLGAGEATQKAIATLFKRLQAALDKQKQQILEYAELDKEEYTKRSALAQLKKLNTPERRTAGKGLRPEQRAELER
LPGELAALRAKLAPLRDFFKNKAVLRYTPNTNSYTKGYMIGAMVCTCATKKLVACSGHAPPGFWPAVKAAEFECVNSRVG
AGAREEKWMCAAKQIMENHGGHKPKHLAERLFYPIVEGIKLERGPKIKFKIREEDINTKKLSEPKEREQVFKHGEDVPSC
SECQEKLPAMYCKTICK*

  Nucleotide sequence: 1254 bp    .

>EFF01809 NC_008095:c2145612-2144359 Type VI Secretion System Effector (Tse) [Myxococcus xanthus DK 1622]
ATGGCCAAGGTAACAGTCAACTTCCCGAGGACGCCCGTCACCAAGGGCAGCTCGGGCATCGCCGCAGCCACGCTGCCCAA
CGTCTGCAAGATGCCCGGCCCGCCGGCTCCCTTCGTGCCCACGCCCTTGCCCAACATCGGCAACAGCGGCGACGCCCCCG
AGGGCTACTCGAAGACAGTCACCATCAACGGGCACCCCGTCGCCATCGCCGGCGCCAGCTTCGGCAGCAAGGGGGACATG
GCCAGCAAGGGGACGGGCGGCGGGCTCATCTCAAGTAACACTCATGGCCCCACGAAGTTCATCGGCCCCGGCTCGATGAA
CGTCAAAATCGAGGGGAGGAATGTGCAGTTGCTGGGCGACCCCATGCTCAACAACTGCGGCCCCTCTGGCAGCCCGGCGA
ATGCCGCCACCATGACGGGCATCATCCAGGCATCCGGCGTGATGACCGTCATCTACGGCGACGACATCCCGTGCTCACGC
TGCGGGAAGGAACACCCGCTGGGGGCAGGCGAAGCGACACAGAAGGCGATTGCAACGCTGTTCAAGCGGCTCCAAGCGGC
TCTCGACAAGCAGAAGCAGCAGATTCTCGAGTACGCCGAGTTGGACAAAGAGGAGTACACAAAGAGGTCGGCGCTCGCAC
AGCTGAAGAAGCTCAACACACCGGAACGACGAACGGCAGGGAAAGGCCTAAGACCAGAGCAGAGGGCAGAATTAGAAAGG
CTGCCGGGCGAACTCGCAGCCCTGAGGGCCAAACTCGCCCCCCTAAGGGACTTCTTCAAGAACAAGGCTGTGCTTCGCTA
TACCCCAAACACCAACTCATACACCAAGGGCTACATGATTGGCGCCATGGTATGCACATGCGCGACCAAGAAGCTCGTGG
CCTGTTCAGGCCATGCGCCACCAGGCTTTTGGCCGGCCGTAAAAGCCGCGGAGTTTGAGTGTGTAAATTCTCGCGTCGGA
GCAGGGGCCCGAGAAGAGAAATGGATGTGTGCCGCCAAGCAGATCATGGAGAACCACGGGGGACACAAGCCCAAACACCT
TGCCGAGCGACTATTTTACCCCATAGTCGAGGGCATCAAGCTCGAAAGGGGTCCGAAGATCAAATTCAAGATTCGAGAAG
AAGACATAAACACCAAGAAGCTCTCTGAACCCAAGGAGCGCGAGCAGGTATTCAAGCATGGCGAAGATGTGCCGTCGTGC
TCAGAGTGCCAAGAAAAACTCCCTGCCATGTACTGCAAGACAATCTGCAAATAG