Detailed information of effector
Summary
| Effector ID | EFF01800  |
| Effector type | Tde |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00945 (Type i1) |
| Strain | Vibrio proteolyticus NBRC 13287 |
| Replicon | chromosome |
| Sequence | Protein sequence (257 a.a.); Nucleotide sequence (771 bp) |
| Description | Tde |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | VPR01S_RS21945 |
| Coordinates (Strand) | 229175..229945 (-) |
| NCBI ID | 545468119 |
| RefSeq | NZ_BATJ01000004 |
| Uniprot ID | U2ZYX6_VIBPR |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| AHH | PF14412.8 | 5e-14 | 44..160 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-256 | MSDTMELEEPIKGNITKKPEPGAPDYRKAWIANVNKYNDKVKPHPFCHGIQMDTHHLISEKALEKCDKALQESLVDKGYNMNSLENLVGIPATFRGACHLGTQVHRSDHKFKKNQFDEILNYDYHETIKDLVTEKKQDINECYGTTATEESERYIHKEIMDKVSQKALRRISSFALPLTSIHTNFQRPQDPQDPQDPQDPYIGCGEGEKVGEVKGGKNCCANKGNHNGEIDTRPGSDFTLDSAINFPQEWDLTRRI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9835 | - | - |
Protein sequence: 257 a.a. .
>EFF01800 NZ_BATJ01000004:c229945-229175 Type VI DNase and RNase Effector (Tde) [Vibrio proteolyticus NBRC 13287]
MSDTMELEEPIKGNITKKPEPGAPDYRKAWIANVNKYNDKVKPHPFCHGIQMDTHHLISEKALEKCDKALQESLVDKGYN
MNSLENLVGIPATFRGACHLGTQVHRSDHKFKKNQFDEILNYDYHETIKDLVTEKKQDINECYGTTATEESERYIHKEIM
DKVSQKALRRISSFALPLTSIHTNFQRPQDPQDPQDPQDPYIGCGEGEKVGEVKGGKNCCANKGNHNGEIDTRPGSDFTL
DSAINFPQEWDLTRRI*
MSDTMELEEPIKGNITKKPEPGAPDYRKAWIANVNKYNDKVKPHPFCHGIQMDTHHLISEKALEKCDKALQESLVDKGYN
MNSLENLVGIPATFRGACHLGTQVHRSDHKFKKNQFDEILNYDYHETIKDLVTEKKQDINECYGTTATEESERYIHKEIM
DKVSQKALRRISSFALPLTSIHTNFQRPQDPQDPQDPQDPYIGCGEGEKVGEVKGGKNCCANKGNHNGEIDTRPGSDFTL
DSAINFPQEWDLTRRI*
Nucleotide sequence: 771 bp .
>EFF01800 NZ_BATJ01000004:c229945-229175 Type VI DNase and RNase Effector (Tde) [Vibrio proteolyticus NBRC 13287]
ATGTCAGACACAATGGAATTAGAAGAGCCCATTAAAGGTAACATTACCAAAAAACCTGAGCCCGGCGCGCCTGATTACCG
CAAAGCTTGGATTGCGAATGTTAATAAGTACAACGATAAAGTGAAGCCGCACCCTTTTTGTCATGGTATCCAAATGGATA
CACACCACCTTATATCTGAGAAAGCACTAGAAAAGTGTGATAAGGCATTGCAAGAGAGCTTGGTTGATAAAGGTTACAAT
ATGAATAGTCTAGAGAACTTAGTTGGAATTCCTGCGACATTTAGAGGGGCTTGTCATTTAGGTACTCAAGTTCATAGGAG
TGATCATAAGTTTAAGAAAAATCAATTTGATGAGATTTTGAATTATGATTACCATGAAACAATCAAGGACTTAGTTACTG
AAAAAAAACAAGACATCAATGAATGTTACGGTACTACAGCTACCGAAGAGAGCGAGCGATACATTCACAAAGAAATTATG
GATAAAGTTAGTCAAAAGGCTTTGAGAAGGATTAGTAGCTTTGCTCTGCCACTAACTTCTATACATACAAACTTTCAACG
CCCCCAAGACCCCCAAGACCCCCAAGACCCCCAAGACCCATATATTGGGTGCGGTGAAGGTGAAAAAGTTGGTGAGGTCA
AAGGTGGTAAAAATTGTTGTGCTAATAAAGGAAATCACAATGGTGAGATTGATACCAGACCAGGCAGCGATTTTACCTTA
GATAGTGCTATAAACTTTCCACAAGAATGGGATTTGACGAGAAGAATATGA
ATGTCAGACACAATGGAATTAGAAGAGCCCATTAAAGGTAACATTACCAAAAAACCTGAGCCCGGCGCGCCTGATTACCG
CAAAGCTTGGATTGCGAATGTTAATAAGTACAACGATAAAGTGAAGCCGCACCCTTTTTGTCATGGTATCCAAATGGATA
CACACCACCTTATATCTGAGAAAGCACTAGAAAAGTGTGATAAGGCATTGCAAGAGAGCTTGGTTGATAAAGGTTACAAT
ATGAATAGTCTAGAGAACTTAGTTGGAATTCCTGCGACATTTAGAGGGGCTTGTCATTTAGGTACTCAAGTTCATAGGAG
TGATCATAAGTTTAAGAAAAATCAATTTGATGAGATTTTGAATTATGATTACCATGAAACAATCAAGGACTTAGTTACTG
AAAAAAAACAAGACATCAATGAATGTTACGGTACTACAGCTACCGAAGAGAGCGAGCGATACATTCACAAAGAAATTATG
GATAAAGTTAGTCAAAAGGCTTTGAGAAGGATTAGTAGCTTTGCTCTGCCACTAACTTCTATACATACAAACTTTCAACG
CCCCCAAGACCCCCAAGACCCCCAAGACCCCCAAGACCCATATATTGGGTGCGGTGAAGGTGAAAAAGTTGGTGAGGTCA
AAGGTGGTAAAAATTGTTGTGCTAATAAAGGAAATCACAATGGTGAGATTGATACCAGACCAGGCAGCGATTTTACCTTA
GATAGTGCTATAAACTTTCCACAAGAATGGGATTTGACGAGAAGAATATGA