Detailed information of effector
Summary
| Effector ID | EFF01534  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00939 (Type i5) |
| Strain | Vibrio alginolyticus 12G01 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Description | hcp |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | V12G01_01540 (hcp1) |
| Coordinates (Strand) | 127580..128098 (-) |
| NCBI ID | 491515782 |
| RefSeq | NZ_CH902589 |
| Uniprot ID | A0A2I3CPL0_VIBAX, A7JYI0_VIBAE, A0A0T7DYZ2_9VIBR, B1PDM0_VIBAL |
| KEGG ID | vag:N646_3978 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 6.4e-31 | 6..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPAYMSIQGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPLVVTKVQDRSSPLLFNALVSGEKLPECVIRFYRTSVQGKQEHYYSIKLIDALLVDIQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGTAGNDDWRAPREA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9660 | - | - |
Protein sequence: 173 a.a. .
>EFF01534 NZ_CH902589:c128098-127580 (Unknown) [Vibrio alginolyticus 12G01]
MPTPAYMSIQGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPLVVTKVQDRSSPL
LFNALVSGEKLPECVIRFYRTSVQGKQEHYYSIKLIDALLVDIQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGT
AGNDDWRAPREA*
MPTPAYMSIQGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPLVVTKVQDRSSPL
LFNALVSGEKLPECVIRFYRTSVQGKQEHYYSIKLIDALLVDIQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGT
AGNDDWRAPREA*
Nucleotide sequence: 519 bp .
>EFF01534 NZ_CH902589:c128098-127580 (Unknown) [Vibrio alginolyticus 12G01]
ATGCCAACTCCAGCATATATGTCTATCCAAGGTGAGACTCAAGGCCATATTACTAAAGATACTTACTCTGCAGATTCAGT
AGGTAACACATGGCAAGAAGCTCACGTTGATGAGTTCCTAGTACAAGAACTTGATCACGTGCTAACAGTTCCACGTGATC
CACAAAGTGGTCAGCCAACTGGTCAACGTGTACACCGTCCACTTGTTGTAACTAAAGTTCAAGATCGCTCATCTCCACTA
CTATTCAACGCACTAGTATCTGGCGAAAAACTTCCTGAGTGTGTGATCCGCTTCTACCGCACTTCAGTTCAAGGTAAACA
AGAGCACTACTACTCAATCAAATTGATTGATGCGCTACTTGTCGATATCCAAACTCGTATGAACCACTGTCAAGACGCAG
CAACAGCTGACCGCGTGACAGAAGAAGTGCTTAAGTTCACTTACCGTGCGATCGAAGTAACTCACGAAAACTGTGGTACT
GCGGGTAACGACGACTGGCGTGCTCCACGCGAAGCTTAA
ATGCCAACTCCAGCATATATGTCTATCCAAGGTGAGACTCAAGGCCATATTACTAAAGATACTTACTCTGCAGATTCAGT
AGGTAACACATGGCAAGAAGCTCACGTTGATGAGTTCCTAGTACAAGAACTTGATCACGTGCTAACAGTTCCACGTGATC
CACAAAGTGGTCAGCCAACTGGTCAACGTGTACACCGTCCACTTGTTGTAACTAAAGTTCAAGATCGCTCATCTCCACTA
CTATTCAACGCACTAGTATCTGGCGAAAAACTTCCTGAGTGTGTGATCCGCTTCTACCGCACTTCAGTTCAAGGTAAACA
AGAGCACTACTACTCAATCAAATTGATTGATGCGCTACTTGTCGATATCCAAACTCGTATGAACCACTGTCAAGACGCAG
CAACAGCTGACCGCGTGACAGAAGAAGTGCTTAAGTTCACTTACCGTGCGATCGAAGTAACTCACGAAAACTGTGGTACT
GCGGGTAACGACGACTGGCGTGCTCCACGCGAAGCTTAA