Detailed information of effector


Summary

Effector ID EFF01533 experimental
Effector type Tse
Cognate immunity protein -
Related T6SS (Type) T6SS01262 experimental (Type i1)
Strain Vibrio parahaemolyticus strain 12-297/B C4271
Replicon chromosome
Sequence Protein sequence (328 a.a.); Nucleotide sequence (984 bp)
Description V12_14460 (PoNi) contains a domain DUF1911 that provides immunity against PoNe.
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) V12_14465 (PoNe)
Coordinates (Strand) 17970..18953 (-)
NCBI ID 639578399
RefSeq NZ_MYFG01000470
Uniprot ID UPI00040290AE
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF1911 PF08929.12 2.8e-26 159..254
DUF1910 PF08928.12 1.3e-08 13..123

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-327 VNTNEMKFTQSRRDPLLELGVYEEVNNYFSKDKTPRFEKMKDPTKSLTNRSRISWSITLNCFEHAILSYSGGQAMESVLDLTEVALKALERHKNDFPHKSYLFWEPDSFQFLLWCLSFVALTGKTEYLSTITRMYGTSPEVSGEACMAQLFRLFNVHGIPDSTEEALVFPDSYQHLYNAIKTGPLEPSKKEREESVKTYLRGWYKGMKDCYWHNRHKARFPTFFGYWALEAAMITLLFDLDDTGYNHLPYYPKDWVAEARKQGFDKLILKANLPSIQVAFPETMCPMTGEWQSNLSSEVLSLKEGEIMPGPLQDENETSYFWVLQEA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9858 - -



  Protein sequence: 328 a.a.    .

>EFF01533 NZ_MYFG01000470:c18953-17970 [Vibrio parahaemolyticus]
VNTNEMKFTQSRRDPLLELGVYEEVNNYFSKDKTPRFEKMKDPTKSLTNRSRISWSITLNCFEHAILSYSGGQAMESVLD
LTEVALKALERHKNDFPHKSYLFWEPDSFQFLLWCLSFVALTGKTEYLSTITRMYGTSPEVSGEACMAQLFRLFNVHGIP
DSTEEALVFPDSYQHLYNAIKTGPLEPSKKEREESVKTYLRGWYKGMKDCYWHNRHKARFPTFFGYWALEAAMITLLFDL
DDTGYNHLPYYPKDWVAEARKQGFDKLILKANLPSIQVAFPETMCPMTGEWQSNLSSEVLSLKEGEIMPGPLQDENETSY
FWVLQEA*

  Nucleotide sequence: 984 bp    .

>EFF01533 NZ_MYFG01000470:c18953-17970 [Vibrio parahaemolyticus]
GTGAATACAAATGAAATGAAGTTTACTCAATCTAGACGAGACCCATTACTTGAGTTAGGTGTGTATGAGGAAGTCAATAA
TTATTTCAGTAAAGATAAGACCCCTCGTTTTGAAAAGATGAAAGATCCAACCAAAAGTCTTACAAATCGATCTAGGATAA
GCTGGAGTATAACGCTCAATTGTTTTGAGCATGCCATATTGAGTTACTCTGGCGGACAAGCGATGGAAAGCGTATTGGAT
CTCACCGAGGTTGCATTAAAAGCATTAGAAAGACACAAAAATGATTTTCCCCATAAATCCTACTTGTTTTGGGAACCTGA
CTCTTTCCAGTTCTTATTATGGTGTTTAAGTTTTGTTGCACTAACTGGAAAAACAGAGTACCTATCAACTATCACTCGCA
TGTATGGAACGTCACCGGAAGTGAGTGGTGAGGCTTGCATGGCTCAGTTGTTCCGCTTGTTTAATGTTCATGGTATTCCA
GATAGCACTGAAGAAGCTCTGGTCTTTCCCGACAGCTACCAGCATTTGTATAACGCGATAAAAACGGGTCCACTGGAGCC
GAGTAAAAAAGAGCGTGAAGAAAGCGTTAAAACTTACCTTCGCGGTTGGTATAAAGGCATGAAAGATTGTTATTGGCATA
ATAGACACAAAGCACGTTTTCCAACGTTTTTTGGTTATTGGGCATTGGAAGCCGCCATGATCACTTTGCTATTTGATTTA
GATGATACTGGTTACAATCATTTGCCTTATTACCCGAAGGATTGGGTAGCAGAAGCACGTAAACAAGGTTTTGATAAGTT
GATACTGAAGGCTAATTTACCGTCTATCCAAGTCGCATTTCCTGAAACAATGTGCCCAATGACAGGGGAATGGCAATCTA
ACCTTTCTTCTGAGGTGCTTTCTCTCAAAGAAGGAGAAATAATGCCGGGTCCACTACAAGATGAAAATGAAACCTCTTAC
TTTTGGGTTTTACAGGAAGCTTGA