Detailed information of effector
Summary
| Effector ID | EFF01529  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00948 (Type i1) |
| Strain | Aeromonas hydrophila NJ-35 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | U876_17565 (Hcp2) |
| Coordinates (Strand) | 3836933..3837451 (-) |
| NCBI ID | 827373572 |
| GenBank | CP006870 |
| Uniprot ID | UPI0000E68F9D |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 7.1e-32 | 7..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPCYISIEGKTQGNITAGAFTSDSVGNIFVQGHEDEMLVQEFQHVVTVPTDPQSGQPAGQRVHKPFKFTVALNKAVPLMYNSLASGEMLPKVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCQMPHCQDPAKSDFTQLIQVSLAYRKINWEHTVAGTSGADDWRAPIEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9760 | - | - |
Protein sequence: 173 a.a. .
>EFF01529 CP006870:c3837451-3836933 (Unknown) [Aeromonas hydrophila NJ-35]
MPTPCYISIEGKTQGNITAGAFTSDSVGNIFVQGHEDEMLVQEFQHVVTVPTDPQSGQPAGQRVHKPFKFTVALNKAVPL
MYNSLASGEMLPKVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCQMPHCQDPAKSDFTQLIQVSLAYRKINWEHTVAGT
SGADDWRAPIEA*
MPTPCYISIEGKTQGNITAGAFTSDSVGNIFVQGHEDEMLVQEFQHVVTVPTDPQSGQPAGQRVHKPFKFTVALNKAVPL
MYNSLASGEMLPKVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCQMPHCQDPAKSDFTQLIQVSLAYRKINWEHTVAGT
SGADDWRAPIEA*
Nucleotide sequence: 519 bp .
>EFF01529 CP006870:c3837451-3836933 (Unknown) [Aeromonas hydrophila NJ-35]
ATGCCAACTCCATGTTATATCAGCATCGAAGGTAAAACCCAGGGCAATATCACCGCTGGTGCCTTCACTTCCGATTCCGT
CGGCAACATCTTCGTGCAGGGCCACGAAGACGAGATGCTGGTGCAAGAGTTCCAGCACGTCGTGACCGTGCCGACTGACC
CGCAATCTGGTCAGCCTGCTGGTCAACGTGTCCACAAGCCGTTCAAGTTCACCGTTGCGCTGAACAAGGCCGTGCCGCTG
ATGTACAACTCGCTGGCCTCCGGCGAAATGCTGCCGAAAGTGACCCTGAAGTGGTACCGCACCTCCGTCGAGGGCAAGCA
GGAACACTTCTTCTCTACCGTGCTGACCGATGCCACCATCGTCGATATCGACTGCCAGATGCCCCACTGCCAGGATCCGG
CGAAGTCTGACTTCACCCAACTGATCCAGGTTTCTCTGGCCTATCGCAAGATCAACTGGGAGCACACCGTTGCCGGTACT
TCCGGTGCAGATGACTGGCGCGCGCCGATCGAGGCCTAA
ATGCCAACTCCATGTTATATCAGCATCGAAGGTAAAACCCAGGGCAATATCACCGCTGGTGCCTTCACTTCCGATTCCGT
CGGCAACATCTTCGTGCAGGGCCACGAAGACGAGATGCTGGTGCAAGAGTTCCAGCACGTCGTGACCGTGCCGACTGACC
CGCAATCTGGTCAGCCTGCTGGTCAACGTGTCCACAAGCCGTTCAAGTTCACCGTTGCGCTGAACAAGGCCGTGCCGCTG
ATGTACAACTCGCTGGCCTCCGGCGAAATGCTGCCGAAAGTGACCCTGAAGTGGTACCGCACCTCCGTCGAGGGCAAGCA
GGAACACTTCTTCTCTACCGTGCTGACCGATGCCACCATCGTCGATATCGACTGCCAGATGCCCCACTGCCAGGATCCGG
CGAAGTCTGACTTCACCCAACTGATCCAGGTTTCTCTGGCCTATCGCAAGATCAACTGGGAGCACACCGTTGCCGGTACT
TCCGGTGCAGATGACTGGCGCGCGCCGATCGAGGCCTAA