Detailed information of effector


Summary

Effector ID EFF01516 experimental
Effector type Tse
Cognate immunity protein -
Related T6SS (Type) T6SS00929 experimental (Type i3)
Strain Serratia marcescens subsp. marcescens Db11
Replicon chromosome
Sequence Protein sequence (163 a.a.); Nucleotide sequence (489 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) SMDB11_2278 (Rhs1)
Coordinates (Strand) 2407591..2408079 (+)
NCBI ID 560174122
GenBank HG326223
Uniprot ID UPI0003C93A59
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-162 MQLDTYDGTLELAGITLGTATTREMLIKGSRLWEGWPEKSDGRTTSYRTIISTKKEKAGDIYIIADFSGAFITDAVLCSWRFAPEKLMMGIQKKVEGAITKNLRTWFYEKTHIQLPVSGSWGHIDAAYDPHNLTGTIVCNYRSAFHTEDEWRKYCKRNNIIY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9726 - -


  Protein sequence: 163 a.a.    .

>EFF01516 HG326223:2407591-2408079 Type VI Secretion System Effector (Tse) [Serratia marcescens subsp. marcescens Db11]
MQLDTYDGTLELAGITLGTATTREMLIKGSRLWEGWPEKSDGRTTSYRTIISTKKEKAGDIYIIADFSGAFITDAVLCSW
RFAPEKLMMGIQKKVEGAITKNLRTWFYEKTHIQLPVSGSWGHIDAAYDPHNLTGTIVCNYRSAFHTEDEWRKYCKRNNI
IY*

  Nucleotide sequence: 489 bp    .

>EFF01516 HG326223:2407591-2408079 Type VI Secretion System Effector (Tse) [Serratia marcescens subsp. marcescens Db11]
ATGCAACTAGATACTTATGACGGAACACTAGAACTCGCGGGAATAACGCTAGGTACAGCGACAACCCGAGAAATGCTAAT
AAAAGGCTCCAGATTGTGGGAGGGTTGGCCAGAAAAGTCAGATGGTAGGACTACATCATACAGAACAATAATCAGTACAA
AAAAAGAAAAAGCCGGCGATATATATATAATTGCCGACTTCTCCGGGGCCTTCATTACAGATGCAGTGCTTTGCAGTTGG
CGTTTTGCGCCTGAAAAACTCATGATGGGAATACAAAAAAAAGTAGAAGGTGCTATTACCAAAAATCTTCGAACATGGTT
TTATGAAAAAACTCATATACAACTTCCAGTTAGTGGTTCATGGGGGCATATTGACGCTGCTTATGACCCACATAATTTAA
CGGGAACAATAGTGTGCAACTATCGCAGTGCATTTCATACTGAGGATGAATGGCGAAAATATTGCAAAAGGAATAACATA
ATTTATTAA