Detailed information of effector
Summary
Effector ID | EFF01508 |
Effector type | - |
Cognate immunity protein | - |
Related T6SS (Type) | T6SS00929 (Type i3) |
Strain | Serratia marcescens subsp. marcescens Db11 |
Replicon | chromosome |
Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
Description | SMA3456 (Hcp) |
Reference | - |
Bioinformatics investigation has been performed
External database links
Locus tag (Gene) | SMDB11_3456 (Hcp) |
Coordinates (Strand) | 3668840..3669322 (+) |
NCBI ID | 560175283 |
GenBank | HG326223 |
Uniprot ID | UPI0002DE0B28 |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_HCP | PF05638.14 | 1.7e-35 | 6..132 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-160 | MAMDMFLKVEGINGESKNANHKQWIDVFSFNWGARQPGNMAVGGGGGAGKVNFRDLTVQALIDKATPALLKYCSAGKHLAKVQLSLCKAGGQEVEYTRITLEDVLVTHTDFIGVEHGSTLGIEYSFQAGKVSMEYWEQAKQGNKGASVQMGWDIKQNKES |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9842 | - | - |
Protein sequence: 161 a.a. .
>EFF01508 HG326223:3668840-3669322 (Unknown) [Serratia marcescens subsp. marcescens Db11]
MAMDMFLKVEGINGESKNANHKQWIDVFSFNWGARQPGNMAVGGGGGAGKVNFRDLTVQALIDKATPALLKYCSAGKHLA
KVQLSLCKAGGQEVEYTRITLEDVLVTHTDFIGVEHGSTLGIEYSFQAGKVSMEYWEQAKQGNKGASVQMGWDIKQNKES
*
MAMDMFLKVEGINGESKNANHKQWIDVFSFNWGARQPGNMAVGGGGGAGKVNFRDLTVQALIDKATPALLKYCSAGKHLA
KVQLSLCKAGGQEVEYTRITLEDVLVTHTDFIGVEHGSTLGIEYSFQAGKVSMEYWEQAKQGNKGASVQMGWDIKQNKES
*
Nucleotide sequence: 483 bp .
>EFF01508 HG326223:3668840-3669322 (Unknown) [Serratia marcescens subsp. marcescens Db11]
ATGGCAATGGATATGTTTTTAAAAGTTGAAGGCATTAATGGTGAATCGAAAAATGCGAATCACAAGCAATGGATCGATGT
CTTTTCCTTTAACTGGGGCGCGCGACAGCCTGGCAATATGGCCGTTGGCGGCGGCGGCGGTGCGGGTAAAGTGAACTTTC
GCGATCTGACCGTACAGGCTCTGATAGATAAAGCAACACCTGCCTTATTGAAATACTGCTCGGCCGGTAAACATCTCGCC
AAGGTGCAGTTGTCTCTTTGCAAAGCCGGTGGGCAGGAAGTGGAATATACCCGCATTACCCTGGAAGATGTATTGGTGAC
TCATACCGACTTCATCGGTGTCGAGCACGGTTCCACGCTAGGCATTGAGTACTCTTTTCAGGCCGGTAAAGTGTCGATGG
AATACTGGGAGCAAGCGAAGCAAGGTAATAAAGGGGCTTCGGTGCAGATGGGCTGGGATATTAAGCAAAATAAAGAAAGC
TAA
ATGGCAATGGATATGTTTTTAAAAGTTGAAGGCATTAATGGTGAATCGAAAAATGCGAATCACAAGCAATGGATCGATGT
CTTTTCCTTTAACTGGGGCGCGCGACAGCCTGGCAATATGGCCGTTGGCGGCGGCGGCGGTGCGGGTAAAGTGAACTTTC
GCGATCTGACCGTACAGGCTCTGATAGATAAAGCAACACCTGCCTTATTGAAATACTGCTCGGCCGGTAAACATCTCGCC
AAGGTGCAGTTGTCTCTTTGCAAAGCCGGTGGGCAGGAAGTGGAATATACCCGCATTACCCTGGAAGATGTATTGGTGAC
TCATACCGACTTCATCGGTGTCGAGCACGGTTCCACGCTAGGCATTGAGTACTCTTTTCAGGCCGGTAAAGTGTCGATGG
AATACTGGGAGCAAGCGAAGCAAGGTAATAAAGGGGCTTCGGTGCAGATGGGCTGGGATATTAAGCAAAATAAAGAAAGC
TAA