Detailed information of effector
Summary
| Effector ID | EFF01508  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00929 (Type i3) |
| Strain | Serratia marcescens subsp. marcescens Db11 |
| Replicon | chromosome |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Description | SMA3456 (Hcp) |
| Reference | - |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | SMDB11_3456 (Hcp) |
| Coordinates (Strand) | 3668840..3669322 (+) |
| NCBI ID | 560175283 |
| GenBank | HG326223 |
| Uniprot ID | UPI0002DE0B28 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.7e-35 | 6..132 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-160 | MAMDMFLKVEGINGESKNANHKQWIDVFSFNWGARQPGNMAVGGGGGAGKVNFRDLTVQALIDKATPALLKYCSAGKHLAKVQLSLCKAGGQEVEYTRITLEDVLVTHTDFIGVEHGSTLGIEYSFQAGKVSMEYWEQAKQGNKGASVQMGWDIKQNKES |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9842 | - | - |
Protein sequence: 161 a.a. .
>EFF01508 HG326223:3668840-3669322 (Unknown) [Serratia marcescens subsp. marcescens Db11]
MAMDMFLKVEGINGESKNANHKQWIDVFSFNWGARQPGNMAVGGGGGAGKVNFRDLTVQALIDKATPALLKYCSAGKHLA
KVQLSLCKAGGQEVEYTRITLEDVLVTHTDFIGVEHGSTLGIEYSFQAGKVSMEYWEQAKQGNKGASVQMGWDIKQNKES
*
MAMDMFLKVEGINGESKNANHKQWIDVFSFNWGARQPGNMAVGGGGGAGKVNFRDLTVQALIDKATPALLKYCSAGKHLA
KVQLSLCKAGGQEVEYTRITLEDVLVTHTDFIGVEHGSTLGIEYSFQAGKVSMEYWEQAKQGNKGASVQMGWDIKQNKES
*
Nucleotide sequence: 483 bp .
>EFF01508 HG326223:3668840-3669322 (Unknown) [Serratia marcescens subsp. marcescens Db11]
ATGGCAATGGATATGTTTTTAAAAGTTGAAGGCATTAATGGTGAATCGAAAAATGCGAATCACAAGCAATGGATCGATGT
CTTTTCCTTTAACTGGGGCGCGCGACAGCCTGGCAATATGGCCGTTGGCGGCGGCGGCGGTGCGGGTAAAGTGAACTTTC
GCGATCTGACCGTACAGGCTCTGATAGATAAAGCAACACCTGCCTTATTGAAATACTGCTCGGCCGGTAAACATCTCGCC
AAGGTGCAGTTGTCTCTTTGCAAAGCCGGTGGGCAGGAAGTGGAATATACCCGCATTACCCTGGAAGATGTATTGGTGAC
TCATACCGACTTCATCGGTGTCGAGCACGGTTCCACGCTAGGCATTGAGTACTCTTTTCAGGCCGGTAAAGTGTCGATGG
AATACTGGGAGCAAGCGAAGCAAGGTAATAAAGGGGCTTCGGTGCAGATGGGCTGGGATATTAAGCAAAATAAAGAAAGC
TAA
ATGGCAATGGATATGTTTTTAAAAGTTGAAGGCATTAATGGTGAATCGAAAAATGCGAATCACAAGCAATGGATCGATGT
CTTTTCCTTTAACTGGGGCGCGCGACAGCCTGGCAATATGGCCGTTGGCGGCGGCGGCGGTGCGGGTAAAGTGAACTTTC
GCGATCTGACCGTACAGGCTCTGATAGATAAAGCAACACCTGCCTTATTGAAATACTGCTCGGCCGGTAAACATCTCGCC
AAGGTGCAGTTGTCTCTTTGCAAAGCCGGTGGGCAGGAAGTGGAATATACCCGCATTACCCTGGAAGATGTATTGGTGAC
TCATACCGACTTCATCGGTGTCGAGCACGGTTCCACGCTAGGCATTGAGTACTCTTTTCAGGCCGGTAAAGTGTCGATGG
AATACTGGGAGCAAGCGAAGCAAGGTAATAAAGGGGCTTCGGTGCAGATGGGCTGGGATATTAAGCAAAATAAAGAAAGC
TAA