Detailed information of effector


Summary

Effector ID EFF01490 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00158 experimental (Type ii)
Strain Francisella tularensis subsp. novicida U112
Replicon chromosome
Sequence Protein sequence (210 a.a.); Nucleotide sequence (630 bp)
Description iglC
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) FTN_1322 (iglC)
Coordinates (Strand) 1396989..1397618 (-)
NCBI ID 118497902
RefSeq NC_008601
Uniprot ID UPI00000BA473
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IglC PF11550.10 6.9e-144 1..209

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-209 MSEMITRQQVTSGETIHVRTDPTACIGSHPNCRLFIDSLTIAGEKLDKNIVAIEGGEDVTKADSATAAASVIRLSITPGSINPTISITLGVLIKSNVRTKIEEKVSSILQASATDMKIKLGNSNKKQEYKTDEAWGIMIDLSNLELYPISAKAFSISIEPTELMGVSKDGMSYHIISIDGLTTSQGSLPVCCAASTDKGVAKIGYIAAA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9850 - -



  Protein sequence: 210 a.a.    .

>EFF01490 NC_008601:c1397618-1396989 [Francisella tularensis subsp. novicida U112]
MSEMITRQQVTSGETIHVRTDPTACIGSHPNCRLFIDSLTIAGEKLDKNIVAIEGGEDVTKADSATAAASVIRLSITPGS
INPTISITLGVLIKSNVRTKIEEKVSSILQASATDMKIKLGNSNKKQEYKTDEAWGIMIDLSNLELYPISAKAFSISIEP
TELMGVSKDGMSYHIISIDGLTTSQGSLPVCCAASTDKGVAKIGYIAAA*

  Nucleotide sequence: 630 bp    .

>EFF01490 NC_008601:c1397618-1396989 [Francisella tularensis subsp. novicida U112]
ATGAGTGAGATGATAACAAGACAACAGGTAACAAGTGGCGAGACCATTCATGTGAGAACTGATCCTACTGCATGTATAGG
ATCTCATCCTAATTGTAGATTATTTATTGATTCTTTAACTATAGCTGGGGAGAAACTTGATAAAAATATCGTTGCTATAG
AGGGTGGAGAGGATGTCACGAAAGCTGATTCGGCTACAGCTGCTGCTAGTGTAATACGTTTATCTATAACGCCAGGCTCT
ATAAATCCAACAATAAGTATTACTCTTGGTGTTCTAATTAAATCAAATGTCAGAACTAAAATTGAAGAGAAAGTTTCGAG
CATATTACAAGCAAGTGCTACAGATATGAAAATTAAGTTAGGTAATTCTAATAAAAAACAAGAGTACAAAACTGATGAAG
CATGGGGTATTATGATAGATCTATCTAATTTAGAGTTATATCCAATAAGTGCTAAGGCTTTTAGTATTAGTATAGAGCCA
ACAGAACTTATGGGTGTTTCAAAAGATGGAATGAGTTATCATATTATATCTATAGATGGTCTTACAACATCTCAAGGAAG
CTTGCCAGTATGTTGCGCAGCTAGCACAGATAAAGGAGTTGCTAAAATAGGATATATTGCAGCTGCATAG