Detailed information of effector
Summary
| Effector ID | EFF01478  |
| Effector type | Tse |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00372 (Type i4b) |
| Strain | Edwardsiella tarda EIB202 |
| Replicon | chromosome |
| Sequence | Protein sequence (72 a.a.); Nucleotide sequence (216 bp) |
| Description | The translocation of the effector is T6SS-dependent, identified from the macrophage infection-responsive E.piscicida genes |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | ETAE_2136 (EseM) |
| Coordinates (Strand) | 2248536..2248751 (+) |
| NCBI ID | 502611987 |
| RefSeq | NC_013508 |
| Uniprot ID | D0Z9J5_EDWTE, A0A0H3DTS7_EDWTF |
| KEGG ID | etr:ETAE_2136, etd:ETAF_1931 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| CSD | PF00313.24 | 3.4e-33 | 5..69 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-71 | MSNKMTGSVKWFNADKGFGFISPADGSKDVFVHFSAIQSNEFRTLDEGQQVEFSVENGPKGPSAVNVVAIN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9838 | - | - |
Protein sequence: 72 a.a. .
>EFF01478 NC_013508:2248536-2248751 Type VI Secretion System Effector (Tse) [Edwardsiella tarda EIB202]
MSNKMTGSVKWFNADKGFGFISPADGSKDVFVHFSAIQSNEFRTLDEGQQVEFSVENGPKGPSAVNVVAIN*
MSNKMTGSVKWFNADKGFGFISPADGSKDVFVHFSAIQSNEFRTLDEGQQVEFSVENGPKGPSAVNVVAIN*
Nucleotide sequence: 216 bp .
>EFF01478 NC_013508:2248536-2248751 Type VI Secretion System Effector (Tse) [Edwardsiella tarda EIB202]
ATGTCTAATAAAATGACTGGTTCTGTAAAATGGTTCAACGCCGATAAAGGCTTCGGCTTTATCTCCCCGGCTGATGGCAG
CAAGGACGTTTTCGTTCATTTCTCTGCCATTCAAAGCAACGAATTCCGCACTCTGGATGAAGGCCAACAGGTTGAGTTCT
CTGTAGAGAATGGTCCTAAAGGTCCTTCAGCTGTAAACGTAGTTGCTATCAACTAA
ATGTCTAATAAAATGACTGGTTCTGTAAAATGGTTCAACGCCGATAAAGGCTTCGGCTTTATCTCCCCGGCTGATGGCAG
CAAGGACGTTTTCGTTCATTTCTCTGCCATTCAAAGCAACGAATTCCGCACTCTGGATGAAGGCCAACAGGTTGAGTTCT
CTGTAGAGAATGGTCCTAAAGGTCCTTCAGCTGTAAACGTAGTTGCTATCAACTAA