Detailed information of effector
Summary
| Effector ID | EFF01477  |
| Effector type | Tse |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00372 (Type i4b) |
| Strain | Edwardsiella tarda EIB202 |
| Replicon | chromosome |
| Sequence | Protein sequence (72 a.a.); Nucleotide sequence (216 bp) |
| Description | The translocation of the effector is T6SS-dependent, identified from the macrophage infection-responsive E.piscicida genes |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | ETAE_1303 (EseL) |
| Coordinates (Strand) | 1411812..1412027 (-) |
| NCBI ID | 502611166 |
| RefSeq | NC_013508 |
| Uniprot ID | D0ZG90_EDWTE, C5BDR9_EDWI9, A0A0H3DPK8_EDWTF |
| KEGG ID | eic:NT01EI_1429, etr:ETAE_1303, etd:ETAF_1215 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| CSD | PF00313.24 | 8.7e-31 | 5..70 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-71 | MSNKMTGLVKWFNADKGFGFITPDNGGSDIFVHFSAIQSNGYKSLDEGQKVAFEVQTGAAKGPSAINVTPL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9830 | - | - |
Protein sequence: 72 a.a. .
>EFF01477 NC_013508:c1412027-1411812 Type VI Secretion System Effector (Tse) [Edwardsiella tarda EIB202]
MSNKMTGLVKWFNADKGFGFITPDNGGSDIFVHFSAIQSNGYKSLDEGQKVAFEVQTGAAKGPSAINVTPL*
MSNKMTGLVKWFNADKGFGFITPDNGGSDIFVHFSAIQSNGYKSLDEGQKVAFEVQTGAAKGPSAINVTPL*
Nucleotide sequence: 216 bp .
>EFF01477 NC_013508:c1412027-1411812 Type VI Secretion System Effector (Tse) [Edwardsiella tarda EIB202]
ATGTCTAATAAAATGACTGGCTTAGTAAAATGGTTCAATGCGGATAAAGGCTTTGGTTTCATCACGCCGGATAACGGCGG
CAGCGATATCTTTGTTCATTTTTCCGCAATTCAAAGCAATGGCTACAAATCCCTGGACGAAGGCCAGAAGGTTGCATTCG
AAGTGCAAACCGGCGCAGCTAAAGGGCCGTCAGCCATTAATGTAACCCCGCTGTAA
ATGTCTAATAAAATGACTGGCTTAGTAAAATGGTTCAATGCGGATAAAGGCTTTGGTTTCATCACGCCGGATAACGGCGG
CAGCGATATCTTTGTTCATTTTTCCGCAATTCAAAGCAATGGCTACAAATCCCTGGACGAAGGCCAGAAGGTTGCATTCG
AAGTGCAAACCGGCGCAGCTAAAGGGCCGTCAGCCATTAATGTAACCCCGCTGTAA