Detailed information of effector
Summary
| Effector ID | EFF01466  |
| Effector type | Tie |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00005 (Type i4a) |
| Strain | Pseudomonas aeruginosa PAO1 |
| Replicon | chromosome |
| Sequence | Protein sequence (179 a.a.); Nucleotide sequence (537 bp) |
| Description | TseF facilitates the delivery of OMV-associated iron to bacterial cells by engaging the Fe (III)-pyochelin receptor FptA and the porin OprF |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | PA2374 |
| Coordinates (Strand) | 2626221..2626757 (+) |
| NCBI ID | 15597570 |
| RefSeq | NC_002516 |
| Uniprot ID | Q9I1A5_PSEAE |
| KEGG ID | pae:PA2374 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-178 | MAASGKLDLVRGDSHLAGNLLDGSLEGPLRIDEHDRPQASLGYRQGQLHGASTLFHPNGKVSAQLAFVDGKLHGPASFHAAEGWLQRKAHYRNGLLHGEAFNYFANGQVAEREHYRDGVRDGVYQRFHGNGQLAFDGRYLNGQLLDGAQPFADDGRPLDSEGKPMARWRWWWTRLAEP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9907 | - | - |
Protein sequence: 179 a.a. .
>EFF01466 NC_002516:2626221-2626757 Type VI Metal Ion acquisition Effector (Tie) [Pseudomonas aeruginosa PAO1]
MAASGKLDLVRGDSHLAGNLLDGSLEGPLRIDEHDRPQASLGYRQGQLHGASTLFHPNGKVSAQLAFVDGKLHGPASFHA
AEGWLQRKAHYRNGLLHGEAFNYFANGQVAEREHYRDGVRDGVYQRFHGNGQLAFDGRYLNGQLLDGAQPFADDGRPLDS
EGKPMARWRWWWTRLAEP*
MAASGKLDLVRGDSHLAGNLLDGSLEGPLRIDEHDRPQASLGYRQGQLHGASTLFHPNGKVSAQLAFVDGKLHGPASFHA
AEGWLQRKAHYRNGLLHGEAFNYFANGQVAEREHYRDGVRDGVYQRFHGNGQLAFDGRYLNGQLLDGAQPFADDGRPLDS
EGKPMARWRWWWTRLAEP*
Nucleotide sequence: 537 bp .
>EFF01466 NC_002516:2626221-2626757 Type VI Metal Ion acquisition Effector (Tie) [Pseudomonas aeruginosa PAO1]
ATGGCGGCATCCGGCAAGCTCGACCTGGTTCGTGGCGACAGCCATCTCGCCGGCAACCTGCTCGACGGCAGCCTGGAAGG
CCCGTTGCGCATCGACGAGCACGACAGGCCGCAGGCCAGCCTCGGCTACCGGCAGGGCCAGTTGCACGGCGCCAGCACCC
TGTTCCATCCCAACGGCAAGGTCTCCGCGCAACTCGCCTTCGTCGACGGCAAGCTGCACGGGCCGGCGAGTTTCCATGCC
GCGGAAGGCTGGTTGCAGCGCAAGGCGCACTACCGCAACGGGCTGCTCCACGGCGAAGCGTTCAACTATTTCGCCAACGG
CCAGGTGGCCGAGCGCGAGCATTACCGCGACGGCGTGCGCGACGGGGTCTACCAGCGCTTCCATGGCAATGGCCAACTGG
CCTTCGACGGACGCTACCTGAACGGCCAGCTACTGGACGGCGCCCAGCCGTTCGCCGACGACGGCCGGCCGCTGGACAGC
GAGGGCAAGCCCATGGCGCGCTGGCGCTGGTGGTGGACCAGGCTGGCGGAGCCCTAG
ATGGCGGCATCCGGCAAGCTCGACCTGGTTCGTGGCGACAGCCATCTCGCCGGCAACCTGCTCGACGGCAGCCTGGAAGG
CCCGTTGCGCATCGACGAGCACGACAGGCCGCAGGCCAGCCTCGGCTACCGGCAGGGCCAGTTGCACGGCGCCAGCACCC
TGTTCCATCCCAACGGCAAGGTCTCCGCGCAACTCGCCTTCGTCGACGGCAAGCTGCACGGGCCGGCGAGTTTCCATGCC
GCGGAAGGCTGGTTGCAGCGCAAGGCGCACTACCGCAACGGGCTGCTCCACGGCGAAGCGTTCAACTATTTCGCCAACGG
CCAGGTGGCCGAGCGCGAGCATTACCGCGACGGCGTGCGCGACGGGGTCTACCAGCGCTTCCATGGCAATGGCCAACTGG
CCTTCGACGGACGCTACCTGAACGGCCAGCTACTGGACGGCGCCCAGCCGTTCGCCGACGACGGCCGGCCGCTGGACAGC
GAGGGCAAGCCCATGGCGCGCTGGCGCTGGTGGTGGACCAGGCTGGCGGAGCCCTAG