Detailed information of effector
Summary
| Effector ID | EFF01317  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00910 (Type iii) |
| Strain | Flavobacterium johnsoniae UW101 |
| Replicon | chromosome |
| Sequence | Protein sequence (129 a.a.); Nucleotide sequence (387 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | FJOH_RS16915 |
| Coordinates (Strand) | 3902237..3902623 (-) |
| NCBI ID | 146301006 |
| RefSeq | NC_009441 |
| Uniprot ID | UPI00006E8CE2 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 2.2e-48 | 1..128 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-128 | MSFLTSLTVAGKDYKVLNVSYDLAQETDASGRPSTVTRGGRIMIEVESTGSTELFEWMTNNFERKDGSVKFIKRDSNATLKELKFTEAYMVKYKENFDHNSENPLTETFMISARKISMGGGEFDNAWV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9165 | - | - |
Protein sequence: 129 a.a. .
>EFF01317 NC_009441:c3902623-3902237 (Unknown) [Flavobacterium johnsoniae UW101]
MSFLTSLTVAGKDYKVLNVSYDLAQETDASGRPSTVTRGGRIMIEVESTGSTELFEWMTNNFERKDGSVKFIKRDSNATL
KELKFTEAYMVKYKENFDHNSENPLTETFMISARKISMGGGEFDNAWV*
MSFLTSLTVAGKDYKVLNVSYDLAQETDASGRPSTVTRGGRIMIEVESTGSTELFEWMTNNFERKDGSVKFIKRDSNATL
KELKFTEAYMVKYKENFDHNSENPLTETFMISARKISMGGGEFDNAWV*
Nucleotide sequence: 387 bp .
>EFF01317 NC_009441:c3902623-3902237 (Unknown) [Flavobacterium johnsoniae UW101]
ATGTCGTTTTTAACATCATTAACAGTAGCAGGAAAAGATTACAAAGTATTAAACGTAAGTTATGATTTAGCTCAAGAAAC
AGATGCTTCTGGGCGTCCATCTACGGTAACACGCGGAGGAAGAATCATGATCGAAGTTGAATCAACTGGAAGTACTGAAT
TATTTGAATGGATGACTAACAATTTCGAAAGAAAAGACGGGTCAGTAAAATTCATCAAACGTGATTCAAATGCTACTTTA
AAAGAGCTAAAGTTTACAGAGGCTTACATGGTTAAGTACAAAGAAAACTTTGATCATAACAGTGAAAATCCATTAACTGA
AACTTTTATGATTTCTGCTCGTAAAATTTCGATGGGTGGAGGAGAATTTGATAATGCTTGGGTATAA
ATGTCGTTTTTAACATCATTAACAGTAGCAGGAAAAGATTACAAAGTATTAAACGTAAGTTATGATTTAGCTCAAGAAAC
AGATGCTTCTGGGCGTCCATCTACGGTAACACGCGGAGGAAGAATCATGATCGAAGTTGAATCAACTGGAAGTACTGAAT
TATTTGAATGGATGACTAACAATTTCGAAAGAAAAGACGGGTCAGTAAAATTCATCAAACGTGATTCAAATGCTACTTTA
AAAGAGCTAAAGTTTACAGAGGCTTACATGGTTAAGTACAAAGAAAACTTTGATCATAACAGTGAAAATCCATTAACTGA
AACTTTTATGATTTCTGCTCGTAAAATTTCGATGGGTGGAGGAGAATTTGATAATGCTTGGGTATAA