Detailed information of effector


Summary

Effector ID EFF01317 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00910 experimental (Type iii)
Strain Flavobacterium johnsoniae UW101
Replicon chromosome
Sequence Protein sequence (129 a.a.); Nucleotide sequence (387 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) FJOH_RS16915
Coordinates (Strand) 3902237..3902623 (-)
NCBI ID 146301006
RefSeq NC_009441
Uniprot ID UPI00006E8CE2
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssD PF17642.3 2.2e-48 1..128

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-128 MSFLTSLTVAGKDYKVLNVSYDLAQETDASGRPSTVTRGGRIMIEVESTGSTELFEWMTNNFERKDGSVKFIKRDSNATLKELKFTEAYMVKYKENFDHNSENPLTETFMISARKISMGGGEFDNAWV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9165 - -



  Protein sequence: 129 a.a.    .

>EFF01317 NC_009441:c3902623-3902237 [Flavobacterium johnsoniae UW101]
MSFLTSLTVAGKDYKVLNVSYDLAQETDASGRPSTVTRGGRIMIEVESTGSTELFEWMTNNFERKDGSVKFIKRDSNATL
KELKFTEAYMVKYKENFDHNSENPLTETFMISARKISMGGGEFDNAWV*

  Nucleotide sequence: 387 bp    .

>EFF01317 NC_009441:c3902623-3902237 [Flavobacterium johnsoniae UW101]
ATGTCGTTTTTAACATCATTAACAGTAGCAGGAAAAGATTACAAAGTATTAAACGTAAGTTATGATTTAGCTCAAGAAAC
AGATGCTTCTGGGCGTCCATCTACGGTAACACGCGGAGGAAGAATCATGATCGAAGTTGAATCAACTGGAAGTACTGAAT
TATTTGAATGGATGACTAACAATTTCGAAAGAAAAGACGGGTCAGTAAAATTCATCAAACGTGATTCAAATGCTACTTTA
AAAGAGCTAAAGTTTACAGAGGCTTACATGGTTAAGTACAAAGAAAACTTTGATCATAACAGTGAAAATCCATTAACTGA
AACTTTTATGATTTCTGCTCGTAAAATTTCGATGGGTGGAGGAGAATTTGATAATGCTTGGGTATAA