Detailed information of effector


Summary

Effector ID EFF01316 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00910 experimental (Type iii)
Strain Flavobacterium johnsoniae UW101
Replicon chromosome
Sequence Protein sequence (603 a.a.); Nucleotide sequence (1809 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) FJOH_RS16905
Coordinates (Strand) 3899844..3901652 (-)
NCBI ID 146301004
RefSeq NC_009441
Uniprot ID UPI00006E8E11
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_base_V PF04717.14 1e-22 362..435
Phage_GPD PF05954.13 1.2e-14 51..326
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-602 MAHFSEQVHITIGSFTQNVVYYDLKLSQKMADHHHFSFVWQYTGKAVINPADQAKALRSYLGDEVIFTFKSLTGIRLMSKGIITELSSIDVDGSPAGLHVSGVSHSIVIDDMKKSRTFKDRSMDDIVLGIFAEGPGEFYQRDSIKSTYLKEFKNLLQYNETSFEFLKRIAARYGQWFYFDGMRMQFGQTKSSQTKLINGASLHSFKIQANMASHKISLNGYDYKNVATFRESAPKTSSGSKDSFAAIVGYNQGTVANSDLNNGAYTANATNKDELDEMIKLQTAGSDANSVYYSGISYFPIGLGQVFTIVNQTVAHELIAIEVVHHSQVHGNYSCEFKAIPADVSAPHYTNVFVYGKAETQPAQVKDNNDPEGLGRVRVEFYGASGTAVTDWIRMVQPYSGSGKGFYFVPEIGEEVLIGFEGNNVQNPYVIGAQYNGQDSSGYADAQNNIKAIHTRSGHVIKFTEDESILIADKNGNEILLDTVGGNITITANNTIDLNAQNINLNASQNITANAGMNITESAGADKMSIVGMMLNTTVGGDHMLNVTGNFMENIEGNLESHTAKERQEVGVKGIDTSSEGGINKHSKKEMQINSAEKSKSY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9966 - -


  Protein sequence: 603 a.a.    .

>EFF01316 NC_009441:c3901652-3899844 (Unknown) [Flavobacterium johnsoniae UW101]
MAHFSEQVHITIGSFTQNVVYYDLKLSQKMADHHHFSFVWQYTGKAVINPADQAKALRSYLGDEVIFTFKSLTGIRLMSK
GIITELSSIDVDGSPAGLHVSGVSHSIVIDDMKKSRTFKDRSMDDIVLGIFAEGPGEFYQRDSIKSTYLKEFKNLLQYNE
TSFEFLKRIAARYGQWFYFDGMRMQFGQTKSSQTKLINGASLHSFKIQANMASHKISLNGYDYKNVATFRESAPKTSSGS
KDSFAAIVGYNQGTVANSDLNNGAYTANATNKDELDEMIKLQTAGSDANSVYYSGISYFPIGLGQVFTIVNQTVAHELIA
IEVVHHSQVHGNYSCEFKAIPADVSAPHYTNVFVYGKAETQPAQVKDNNDPEGLGRVRVEFYGASGTAVTDWIRMVQPYS
GSGKGFYFVPEIGEEVLIGFEGNNVQNPYVIGAQYNGQDSSGYADAQNNIKAIHTRSGHVIKFTEDESILIADKNGNEIL
LDTVGGNITITANNTIDLNAQNINLNASQNITANAGMNITESAGADKMSIVGMMLNTTVGGDHMLNVTGNFMENIEGNLE
SHTAKERQEVGVKGIDTSSEGGINKHSKKEMQINSAEKSKSY*

  Nucleotide sequence: 1809 bp    .

>EFF01316 NC_009441:c3901652-3899844 (Unknown) [Flavobacterium johnsoniae UW101]
ATGGCACATTTTTCAGAACAAGTACATATAACTATAGGAAGTTTTACCCAAAACGTTGTTTATTATGATTTAAAGCTATC
TCAAAAAATGGCCGATCATCATCATTTTTCTTTTGTTTGGCAATATACAGGTAAAGCCGTAATTAACCCGGCAGATCAGG
CTAAGGCTCTTAGAAGCTATCTTGGAGACGAAGTAATTTTTACTTTTAAAAGTCTTACTGGGATCAGATTAATGAGCAAA
GGTATAATTACTGAACTTTCATCGATTGATGTTGATGGAAGTCCGGCAGGATTACACGTTTCTGGTGTAAGTCACAGTAT
TGTTATTGATGATATGAAAAAATCAAGAACATTTAAAGACCGCAGTATGGATGATATCGTATTGGGGATTTTTGCTGAAG
GACCGGGAGAATTTTATCAAAGAGATTCTATTAAATCGACTTATCTTAAAGAATTTAAAAATCTTTTACAATATAACGAA
ACTAGTTTTGAATTTTTAAAAAGAATAGCAGCACGTTATGGACAATGGTTTTATTTTGACGGAATGCGTATGCAGTTCGG
ACAGACAAAAAGCAGCCAGACCAAGCTTATAAATGGAGCTTCATTACACAGCTTTAAGATACAAGCTAATATGGCTTCAC
ATAAAATTTCGCTGAACGGTTATGATTATAAAAATGTAGCAACTTTTCGTGAGTCAGCACCTAAGACTTCATCTGGAAGT
AAAGACAGCTTTGCCGCTATTGTAGGTTATAATCAAGGAACTGTAGCAAATTCTGATTTAAATAATGGGGCTTATACCGC
AAATGCCACAAACAAAGACGAACTTGATGAAATGATAAAACTGCAGACTGCGGGCAGTGATGCCAACAGTGTTTATTACA
GCGGTATTTCTTATTTTCCAATTGGTCTTGGACAGGTATTTACAATAGTAAACCAAACAGTAGCACATGAATTAATTGCT
ATTGAAGTTGTACATCATTCTCAGGTGCATGGAAATTATTCTTGTGAGTTTAAAGCAATTCCTGCAGATGTGTCAGCACC
ACACTATACAAATGTATTTGTTTATGGCAAAGCCGAAACACAGCCTGCACAAGTAAAAGATAATAATGATCCTGAAGGAT
TAGGACGTGTAAGAGTAGAATTTTATGGTGCAAGCGGTACAGCAGTTACAGATTGGATAAGAATGGTGCAGCCTTATTCT
GGTTCAGGAAAAGGATTTTATTTTGTTCCTGAAATCGGAGAAGAAGTTTTAATTGGTTTTGAAGGCAATAACGTCCAGAA
TCCTTATGTAATTGGTGCGCAGTATAACGGACAAGATTCAAGTGGTTATGCAGATGCACAGAATAACATTAAAGCGATTC
ATACGAGAAGCGGTCATGTAATAAAATTCACAGAAGATGAGAGCATCTTAATTGCTGATAAGAACGGTAATGAGATACTA
TTGGATACTGTTGGAGGTAACATAACTATTACAGCAAACAACACCATTGATCTAAACGCACAAAACATCAATCTTAATGC
TTCTCAAAATATTACTGCTAATGCAGGAATGAATATTACAGAAAGTGCCGGAGCCGACAAAATGAGTATTGTAGGTATGA
TGCTTAATACTACTGTAGGAGGTGATCATATGCTTAATGTTACAGGAAACTTCATGGAAAACATTGAAGGAAATCTTGAA
TCTCATACGGCTAAAGAAAGACAGGAAGTTGGAGTTAAAGGAATTGATACAAGCAGTGAAGGAGGGATAAATAAACACTC
TAAAAAAGAAATGCAAATTAACAGCGCCGAAAAATCTAAATCTTACTAA