Detailed information of effector
Summary
| Effector ID | EFF01313  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00127 (Type i1) |
| Strain | Myxococcus xanthus DK 1622 |
| Replicon | chromosome |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Description | hcp |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | MXAN_4809 (hcp) |
| Coordinates (Strand) | 6018067..6018558 (+) |
| NCBI ID | 108762846 |
| RefSeq | NC_008095 |
| Uniprot ID | UPI00004FE5DA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 3.9e-25 | 8..147 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MAESVHLYLKANGSDIKGDSTQTSLGRADSIECVAYSQKVFTAREAGSGLATGRRQYEGIEITKRIDKSSPLLMKALCENQVIDATFKFFRPNPTGDGTTEQFYTVSIKKARINAIQQTVPNSFVPASTNLPPMETLQLVFHTINWTITQGGVTHEDTWDTQR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9871 | - | - |
Protein sequence: 164 a.a. .
>EFF01313 NC_008095:6018067-6018558 (Unknown) [Myxococcus xanthus DK 1622]
MAESVHLYLKANGSDIKGDSTQTSLGRADSIECVAYSQKVFTAREAGSGLATGRRQYEGIEITKRIDKSSPLLMKALCEN
QVIDATFKFFRPNPTGDGTTEQFYTVSIKKARINAIQQTVPNSFVPASTNLPPMETLQLVFHTINWTITQGGVTHEDTWD
TQR*
MAESVHLYLKANGSDIKGDSTQTSLGRADSIECVAYSQKVFTAREAGSGLATGRRQYEGIEITKRIDKSSPLLMKALCEN
QVIDATFKFFRPNPTGDGTTEQFYTVSIKKARINAIQQTVPNSFVPASTNLPPMETLQLVFHTINWTITQGGVTHEDTWD
TQR*
Nucleotide sequence: 492 bp .
>EFF01313 NC_008095:6018067-6018558 (Unknown) [Myxococcus xanthus DK 1622]
ATGGCTGAATCAGTACACCTGTACCTGAAGGCGAACGGCAGCGACATCAAGGGCGACAGCACGCAGACCAGCCTGGGCCG
CGCGGACTCCATCGAGTGCGTCGCGTACAGCCAGAAGGTCTTCACCGCTCGCGAGGCCGGTTCGGGTCTGGCGACGGGCC
GCCGCCAGTACGAGGGCATCGAAATCACCAAGCGCATCGACAAGTCGTCGCCGCTGCTGATGAAGGCCCTCTGCGAGAAC
CAGGTCATCGACGCGACCTTCAAGTTCTTCCGTCCGAACCCGACGGGCGACGGCACCACCGAGCAGTTCTACACGGTGTC
CATCAAGAAGGCCCGCATCAACGCCATCCAACAGACGGTGCCGAACTCCTTCGTGCCGGCGAGCACCAACCTGCCCCCGA
TGGAGACCCTCCAGCTGGTGTTCCACACCATCAACTGGACCATCACCCAGGGCGGCGTTACGCACGAGGACACCTGGGAC
ACCCAGCGTTGA
ATGGCTGAATCAGTACACCTGTACCTGAAGGCGAACGGCAGCGACATCAAGGGCGACAGCACGCAGACCAGCCTGGGCCG
CGCGGACTCCATCGAGTGCGTCGCGTACAGCCAGAAGGTCTTCACCGCTCGCGAGGCCGGTTCGGGTCTGGCGACGGGCC
GCCGCCAGTACGAGGGCATCGAAATCACCAAGCGCATCGACAAGTCGTCGCCGCTGCTGATGAAGGCCCTCTGCGAGAAC
CAGGTCATCGACGCGACCTTCAAGTTCTTCCGTCCGAACCCGACGGGCGACGGCACCACCGAGCAGTTCTACACGGTGTC
CATCAAGAAGGCCCGCATCAACGCCATCCAACAGACGGTGCCGAACTCCTTCGTGCCGGCGAGCACCAACCTGCCCCCGA
TGGAGACCCTCCAGCTGGTGTTCCACACCATCAACTGGACCATCACCCAGGGCGGCGTTACGCACGAGGACACCTGGGAC
ACCCAGCGTTGA