Detailed information of effector
Summary
| Effector ID | EFF01271  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00113 (Type i1) |
| Strain | Burkholderia thailandensis E264 |
| Replicon | chromosome |
| Sequence | Protein sequence (163 a.a.); Nucleotide sequence (489 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | BTH_RS04505 |
| Coordinates (Strand) | 1018597..1019085 (-) |
| NCBI ID | 83716550 |
| RefSeq | NC_007650 |
| Uniprot ID | UPI0000667454 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.3e-38 | 6..146 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-162 | MPMPCYLTLEGQTQGSIEGSCDIQGHEGKILVQAVEHTIEIPKSPQTGLPTSKRLHGPMTLTKEIDKSSPKLSQALASGEQMKSVVLEFYRILKEGKEEHYYTVKLENAILTSIRSWTPNCLVLDNKQLGHMEDVSFTYEKITWTYVPDGIEAEDSWRAPKV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9624 | - | - |
Protein sequence: 163 a.a. .
>EFF01271 NC_007650:c1019085-1018597 (Unknown) [Burkholderia thailandensis E264]
MPMPCYLTLEGQTQGSIEGSCDIQGHEGKILVQAVEHTIEIPKSPQTGLPTSKRLHGPMTLTKEIDKSSPKLSQALASGE
QMKSVVLEFYRILKEGKEEHYYTVKLENAILTSIRSWTPNCLVLDNKQLGHMEDVSFTYEKITWTYVPDGIEAEDSWRAP
KV*
MPMPCYLTLEGQTQGSIEGSCDIQGHEGKILVQAVEHTIEIPKSPQTGLPTSKRLHGPMTLTKEIDKSSPKLSQALASGE
QMKSVVLEFYRILKEGKEEHYYTVKLENAILTSIRSWTPNCLVLDNKQLGHMEDVSFTYEKITWTYVPDGIEAEDSWRAP
KV*
Nucleotide sequence: 489 bp .
>EFF01271 NC_007650:c1019085-1018597 (Unknown) [Burkholderia thailandensis E264]
ATGCCGATGCCGTGCTATCTCACGCTCGAAGGGCAAACCCAGGGCAGCATCGAGGGTTCCTGCGACATCCAGGGCCACGA
GGGCAAGATTCTCGTCCAGGCCGTCGAGCACACGATCGAGATCCCGAAGAGCCCGCAAACGGGCCTGCCGACCAGCAAGC
GGCTCCACGGGCCGATGACGCTGACCAAGGAGATCGACAAGTCGTCGCCGAAGCTGTCTCAGGCGCTCGCGTCCGGCGAG
CAGATGAAGTCGGTCGTGCTCGAGTTCTACCGGATTCTGAAGGAAGGCAAGGAAGAGCACTACTACACGGTCAAGCTCGA
GAACGCGATCCTCACGAGCATCCGCTCCTGGACGCCGAACTGCCTCGTGCTCGACAACAAGCAGCTCGGCCACATGGAAG
ACGTATCGTTCACGTACGAGAAGATCACGTGGACCTACGTGCCGGACGGCATCGAGGCCGAGGACTCATGGCGCGCGCCG
AAGGTGTGA
ATGCCGATGCCGTGCTATCTCACGCTCGAAGGGCAAACCCAGGGCAGCATCGAGGGTTCCTGCGACATCCAGGGCCACGA
GGGCAAGATTCTCGTCCAGGCCGTCGAGCACACGATCGAGATCCCGAAGAGCCCGCAAACGGGCCTGCCGACCAGCAAGC
GGCTCCACGGGCCGATGACGCTGACCAAGGAGATCGACAAGTCGTCGCCGAAGCTGTCTCAGGCGCTCGCGTCCGGCGAG
CAGATGAAGTCGGTCGTGCTCGAGTTCTACCGGATTCTGAAGGAAGGCAAGGAAGAGCACTACTACACGGTCAAGCTCGA
GAACGCGATCCTCACGAGCATCCGCTCCTGGACGCCGAACTGCCTCGTGCTCGACAACAAGCAGCTCGGCCACATGGAAG
ACGTATCGTTCACGTACGAGAAGATCACGTGGACCTACGTGCCGGACGGCATCGAGGCCGAGGACTCATGGCGCGCGCCG
AAGGTGTGA