Detailed information of effector


Summary

Effector ID EFF01123 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00838 experimental (Type i1)
Strain Proteus mirabilis BB2000
Replicon chromosome
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) BB2000_RS14595
Coordinates (Strand) 3275686..3276204 (+)
NCBI ID 529238652
RefSeq NC_022000
Uniprot ID UPI00017A2F33
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 6.1e-35 7..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MPTPCYISIEGKTQGNITAGAFTADSVGNIYVQGHEDQMLVQAFSHVVTVPTDPQSGQPSGQRAHKPFRFTVALNKAVPLLYNALASGEMLPKVELKWYRTSVEGKQEHFFTTTLTDATIVNIDCQMPHCQDPAKADFTQLIEVSLSYRKVDWEHTVAGTSGADDWRAPLEA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9681 - -



  Protein sequence: 173 a.a.    .

>EFF01123 NC_022000:3275686-3276204 [Proteus mirabilis BB2000]
MPTPCYISIEGKTQGNITAGAFTADSVGNIYVQGHEDQMLVQAFSHVVTVPTDPQSGQPSGQRAHKPFRFTVALNKAVPL
LYNALASGEMLPKVELKWYRTSVEGKQEHFFTTTLTDATIVNIDCQMPHCQDPAKADFTQLIEVSLSYRKVDWEHTVAGT
SGADDWRAPLEA*

  Nucleotide sequence: 519 bp    .

>EFF01123 NC_022000:3275686-3276204 [Proteus mirabilis BB2000]
ATGCCAACTCCTTGCTATATTTCCATTGAAGGAAAAACTCAGGGCAACATCACTGCAGGCGCGTTTACTGCAGATTCTGT
CGGCAACATTTATGTACAAGGTCATGAAGACCAAATGTTGGTACAAGCATTTTCTCACGTGGTGACGGTTCCGACCGATC
CACAATCAGGACAACCTTCCGGCCAACGTGCGCATAAACCATTTCGTTTTACCGTGGCATTAAATAAAGCGGTTCCCCTG
CTGTATAACGCATTGGCTTCCGGCGAAATGTTGCCAAAAGTCGAGCTAAAATGGTATCGCACCTCGGTAGAAGGTAAACA
AGAGCACTTCTTTACCACCACACTGACTGACGCGACTATCGTGAACATCGATTGCCAAATGCCTCATTGCCAAGATCCGG
CTAAAGCCGACTTCACGCAACTTATCGAAGTCTCCCTCTCTTACCGCAAAGTTGACTGGGAGCATACTGTTGCCGGGACT
TCAGGTGCAGATGACTGGCGTGCACCACTCGAAGCATAA