Detailed information of effector
Summary
| Effector ID | EFF01121  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00838 (Type i1) |
| Strain | Proteus mirabilis BB2000 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | BB2000_RS03990 |
| Coordinates (Strand) | 940506..941024 (+) |
| NCBI ID | 529236520 |
| RefSeq | NC_022000 |
| Uniprot ID | UPI00017AFB61 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 3.7e-35 | 7..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPCYISIEGKTQGNITAGAFTADSVGNIYVQGHEDQMLVQEFSHVVTVPTDPQSGQPSGQRAHKPFRFTVALNKAVPLLYNALASGEMLPKVELKWYRTSVEGKQEHFFTTTLTDATIVNIDCQMPHCQDPAKADFTQLIEVSLSYRKIDWEHTVAGTSGADDWRAPLEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9672 | - | - |
Protein sequence: 173 a.a. .
>EFF01121 NC_022000:940506-941024 (Unknown) [Proteus mirabilis BB2000]
MPTPCYISIEGKTQGNITAGAFTADSVGNIYVQGHEDQMLVQEFSHVVTVPTDPQSGQPSGQRAHKPFRFTVALNKAVPL
LYNALASGEMLPKVELKWYRTSVEGKQEHFFTTTLTDATIVNIDCQMPHCQDPAKADFTQLIEVSLSYRKIDWEHTVAGT
SGADDWRAPLEA*
MPTPCYISIEGKTQGNITAGAFTADSVGNIYVQGHEDQMLVQEFSHVVTVPTDPQSGQPSGQRAHKPFRFTVALNKAVPL
LYNALASGEMLPKVELKWYRTSVEGKQEHFFTTTLTDATIVNIDCQMPHCQDPAKADFTQLIEVSLSYRKIDWEHTVAGT
SGADDWRAPLEA*
Nucleotide sequence: 519 bp .
>EFF01121 NC_022000:940506-941024 (Unknown) [Proteus mirabilis BB2000]
ATGCCAACTCCTTGCTATATTTCCATTGAAGGAAAAACTCAGGGCAACATCACTGCAGGCGCGTTTACTGCAGATTCTGT
CGGCAACATTTATGTACAAGGTCATGAAGACCAAATGTTGGTACAAGAATTTTCTCACGTGGTGACGGTTCCGACTGATC
CGCAATCAGGCCAACCTTCTGGCCAACGTGCGCATAAACCGTTTCGTTTTACCGTGGCATTAAACAAAGCCGTTCCTCTG
CTGTATAACGCATTGGCTTCCGGCGAAATGCTGCCAAAAGTTGAGTTAAAATGGTATCGCACGTCTGTTGAAGGTAAACA
AGAGCACTTCTTTACCACCACACTGACTGACGCGACGATCGTGAACATCGATTGCCAAATGCCTCATTGTCAAGATCCGG
CTAAAGCCGACTTCACGCAACTTATCGAAGTTTCCCTCTCTTACCGCAAAATTGACTGGGAGCACACTGTTGCTGGAACG
TCTGGTGCGGATGACTGGCGTGCGCCTCTCGAAGCGTAA
ATGCCAACTCCTTGCTATATTTCCATTGAAGGAAAAACTCAGGGCAACATCACTGCAGGCGCGTTTACTGCAGATTCTGT
CGGCAACATTTATGTACAAGGTCATGAAGACCAAATGTTGGTACAAGAATTTTCTCACGTGGTGACGGTTCCGACTGATC
CGCAATCAGGCCAACCTTCTGGCCAACGTGCGCATAAACCGTTTCGTTTTACCGTGGCATTAAACAAAGCCGTTCCTCTG
CTGTATAACGCATTGGCTTCCGGCGAAATGCTGCCAAAAGTTGAGTTAAAATGGTATCGCACGTCTGTTGAAGGTAAACA
AGAGCACTTCTTTACCACCACACTGACTGACGCGACGATCGTGAACATCGATTGCCAAATGCCTCATTGTCAAGATCCGG
CTAAAGCCGACTTCACGCAACTTATCGAAGTTTCCCTCTCTTACCGCAAAATTGACTGGGAGCACACTGTTGCTGGAACG
TCTGGTGCGGATGACTGGCGTGCGCCTCTCGAAGCGTAA