Detailed information of effector
Summary
| Effector ID | EFF01010  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00790 (Type i1) |
| Strain | Vibrio cholerae V52 |
| Replicon | chromosome |
| Sequence | Protein sequence (219 a.a.); Nucleotide sequence (657 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | VCV52_RS01015 |
| Coordinates (Strand) | 211606..212262 (-) |
| NCBI ID | WP_001223375.1 |
| RefSeq | NZ_KQ410497 |
| Uniprot ID | UPI00005F4E9B |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| VasI | PF11319.10 | 1.1e-54 | 37..218 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-218 | MRITVLVASLILGCAGSAHVFAASQDAGSQVEQAELCREIPARLERLACFDRVFATPLEQVAIAPSNPYPAEWQRAMAALSESQSEAGWVLGTQGEGRGSSAWIALPAQNRSSGETSPPVLLLSCINNLSRIELALPKEVADARIQVSIRHETQFWRSDDHGVLFSSARGMPAIEMMKLAASEPRLLLRSNAPFADGLQFDTRGVNEALDALRERCGW |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| SP(Sec/SPI) | 0.7203 | pos: 22-23. VFA-AS. | MRITVLVASLILGCAGSAHVFA |
Protein sequence: 219 a.a. .
>EFF01010 NZ_KQ410497:c212262-211606 (Unknown) [Vibrio cholerae V52]
MRITVLVASLILGCAGSAHVFAASQDAGSQVEQAELCREIPARLERLACFDRVFATPLEQVAIAPSNPYPAEWQRAMAAL
SESQSEAGWVLGTQGEGRGSSAWIALPAQNRSSGETSPPVLLLSCINNLSRIELALPKEVADARIQVSIRHETQFWRSDD
HGVLFSSARGMPAIEMMKLAASEPRLLLRSNAPFADGLQFDTRGVNEALDALRERCGW*
MRITVLVASLILGCAGSAHVFAASQDAGSQVEQAELCREIPARLERLACFDRVFATPLEQVAIAPSNPYPAEWQRAMAAL
SESQSEAGWVLGTQGEGRGSSAWIALPAQNRSSGETSPPVLLLSCINNLSRIELALPKEVADARIQVSIRHETQFWRSDD
HGVLFSSARGMPAIEMMKLAASEPRLLLRSNAPFADGLQFDTRGVNEALDALRERCGW*
Nucleotide sequence: 657 bp .
>EFF01010 NZ_KQ410497:c212262-211606 (Unknown) [Vibrio cholerae V52]
ATGAGAATTACCGTTTTAGTGGCCAGTTTGATCTTGGGTTGCGCGGGCTCTGCGCATGTTTTTGCAGCATCGCAAGATGC
GGGATCGCAGGTTGAGCAAGCTGAGCTGTGCCGCGAAATTCCTGCGCGTTTAGAGCGTTTGGCTTGTTTTGACCGTGTCT
TTGCCACGCCCCTTGAGCAAGTGGCTATCGCACCGTCCAATCCTTATCCCGCAGAGTGGCAACGCGCCATGGCGGCATTG
TCTGAGTCGCAGTCCGAAGCGGGTTGGGTATTAGGTACGCAAGGTGAAGGGCGGGGCAGCAGCGCTTGGATTGCTTTGCC
TGCGCAAAATCGCAGCTCAGGGGAAACATCTCCGCCAGTGCTCTTGCTCAGTTGCATTAATAACCTGAGCCGCATTGAGC
TGGCTTTACCGAAAGAAGTGGCTGATGCACGGATTCAAGTCTCTATCCGACACGAGACACAGTTCTGGCGCAGTGACGAT
CACGGCGTACTGTTTTCCTCGGCTCGCGGCATGCCTGCGATCGAAATGATGAAATTGGCCGCCAGTGAGCCTCGCCTGTT
GCTGCGTTCTAATGCGCCCTTTGCTGACGGGTTACAGTTTGATACTCGAGGTGTCAATGAAGCCCTTGATGCTTTGCGCG
AACGCTGTGGTTGGTAA
ATGAGAATTACCGTTTTAGTGGCCAGTTTGATCTTGGGTTGCGCGGGCTCTGCGCATGTTTTTGCAGCATCGCAAGATGC
GGGATCGCAGGTTGAGCAAGCTGAGCTGTGCCGCGAAATTCCTGCGCGTTTAGAGCGTTTGGCTTGTTTTGACCGTGTCT
TTGCCACGCCCCTTGAGCAAGTGGCTATCGCACCGTCCAATCCTTATCCCGCAGAGTGGCAACGCGCCATGGCGGCATTG
TCTGAGTCGCAGTCCGAAGCGGGTTGGGTATTAGGTACGCAAGGTGAAGGGCGGGGCAGCAGCGCTTGGATTGCTTTGCC
TGCGCAAAATCGCAGCTCAGGGGAAACATCTCCGCCAGTGCTCTTGCTCAGTTGCATTAATAACCTGAGCCGCATTGAGC
TGGCTTTACCGAAAGAAGTGGCTGATGCACGGATTCAAGTCTCTATCCGACACGAGACACAGTTCTGGCGCAGTGACGAT
CACGGCGTACTGTTTTCCTCGGCTCGCGGCATGCCTGCGATCGAAATGATGAAATTGGCCGCCAGTGAGCCTCGCCTGTT
GCTGCGTTCTAATGCGCCCTTTGCTGACGGGTTACAGTTTGATACTCGAGGTGTCAATGAAGCCCTTGATGCTTTGCGCG
AACGCTGTGGTTGGTAA