Detailed information of effector
Summary
| Effector ID | EFF00961  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00086 (Type i4b) |
| Strain | Pseudomonas syringae pv. syringae B728a |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | PSYR_RS25780 |
| Coordinates (Strand) | 5889737..5890255 (+) |
| NCBI ID | 66048189 |
| RefSeq | NC_007005 |
| Uniprot ID | Q4ZLI0_PSEU2 |
| KEGG ID | psb:Psyr_4965 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.4e-40 | 6..145 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MAFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSIRKSVDKASAKLFEACCKGTHIAKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGSQKGEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVTGGWDRTANKVFA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9477 | - | - |
Protein sequence: 173 a.a. .
>EFF00961 NC_007005:5889737-5890255 (Unknown) [Pseudomonas syringae pv. syringae B728a]
MAFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSIRKSVDKASAKLFEACCKGTH
IAKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGSQKGEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVT
GGWDRTANKVFA*
MAFDAYIQIDGIPGEVLDDKHKDWIEVLGYEFGATQATSATASSSGGASSERVALSDFSIRKSVDKASAKLFEACCKGTH
IAKIQLNVNRAGGDKLTYLTINLEEVVVSSVKAVAGGSQKGEDNAVSDLPIEEISFNFARIKTTYTQQSRSDGQGGGNVT
GGWDRTANKVFA*
Nucleotide sequence: 519 bp .
>EFF00961 NC_007005:5889737-5890255 (Unknown) [Pseudomonas syringae pv. syringae B728a]
ATGGCATTTGACGCATACATCCAAATCGATGGCATCCCAGGCGAAGTTCTGGACGACAAGCACAAGGACTGGATCGAAGT
GTTGGGCTACGAGTTCGGCGCTACCCAGGCCACCTCGGCGACCGCCAGTTCTTCGGGCGGTGCTTCGTCCGAGCGCGTTG
CACTGAGCGACTTCAGCATCCGCAAGTCTGTGGACAAGGCTTCCGCCAAGCTGTTCGAAGCGTGCTGCAAGGGCACTCAC
ATCGCCAAGATCCAGCTGAACGTCAACCGTGCAGGCGGCGACAAGCTGACCTACCTGACCATCAACCTGGAAGAAGTGGT
TGTGTCTTCCGTGAAGGCGGTTGCTGGCGGTAGCCAGAAAGGCGAAGACAACGCAGTCAGCGATCTGCCGATTGAAGAAA
TCAGCTTCAACTTCGCTCGCATCAAGACCACCTACACCCAGCAGAGCCGTTCCGATGGCCAGGGTGGCGGTAACGTCACT
GGCGGCTGGGACCGCACTGCGAACAAAGTATTCGCATAA
ATGGCATTTGACGCATACATCCAAATCGATGGCATCCCAGGCGAAGTTCTGGACGACAAGCACAAGGACTGGATCGAAGT
GTTGGGCTACGAGTTCGGCGCTACCCAGGCCACCTCGGCGACCGCCAGTTCTTCGGGCGGTGCTTCGTCCGAGCGCGTTG
CACTGAGCGACTTCAGCATCCGCAAGTCTGTGGACAAGGCTTCCGCCAAGCTGTTCGAAGCGTGCTGCAAGGGCACTCAC
ATCGCCAAGATCCAGCTGAACGTCAACCGTGCAGGCGGCGACAAGCTGACCTACCTGACCATCAACCTGGAAGAAGTGGT
TGTGTCTTCCGTGAAGGCGGTTGCTGGCGGTAGCCAGAAAGGCGAAGACAACGCAGTCAGCGATCTGCCGATTGAAGAAA
TCAGCTTCAACTTCGCTCGCATCAAGACCACCTACACCCAGCAGAGCCGTTCCGATGGCCAGGGTGGCGGTAACGTCACT
GGCGGCTGGGACCGCACTGCGAACAAAGTATTCGCATAA