Detailed information of effector
Summary
| Effector ID | EFF00563  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00466 (Type ii) |
| Strain | Francisella tularensis subsp. holarctica LVS |
| Replicon | chromosome |
| Sequence | Protein sequence (165 a.a.); Nucleotide sequence (495 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | FTT_1347 (VgrG) |
| Coordinates (Strand) | 117678..118172 (-) |
| NCBI ID | 89255560 |
| RefSeq | NC_007880 |
| Uniprot ID | UPI00004502EE |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-164 | MSKADHIFNLEEQGLLIDIKDDSKGCTTKLESSGKITHNATESIESSADKQIIENVKDSKISITEKEILLATKKSSIMLSEDKIVIKIGNSLIILDDSNISLESATINIKSSANINIQASQNIDIKSLNNSIKADVNLNAEGLDVNIKGSVTASIKGSTATMVG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9898 | - | - |
Protein sequence: 165 a.a. .
>EFF00563 NC_007880:c118172-117678 (Unknown) [Francisella tularensis subsp. holarctica LVS]
MSKADHIFNLEEQGLLIDIKDDSKGCTTKLESSGKITHNATESIESSADKQIIENVKDSKISITEKEILLATKKSSIMLS
EDKIVIKIGNSLIILDDSNISLESATINIKSSANINIQASQNIDIKSLNNSIKADVNLNAEGLDVNIKGSVTASIKGSTA
TMVG*
MSKADHIFNLEEQGLLIDIKDDSKGCTTKLESSGKITHNATESIESSADKQIIENVKDSKISITEKEILLATKKSSIMLS
EDKIVIKIGNSLIILDDSNISLESATINIKSSANINIQASQNIDIKSLNNSIKADVNLNAEGLDVNIKGSVTASIKGSTA
TMVG*
Nucleotide sequence: 495 bp .
>EFF00563 NC_007880:c118172-117678 (Unknown) [Francisella tularensis subsp. holarctica LVS]
ATGTCAAAAGCAGACCATATTTTCAACTTAGAAGAGCAAGGCTTGCTCATAGATATCAAAGATGATTCAAAAGGCTGCAC
TACGAAACTAGAGTCCTCTGGAAAAATCACTCATAATGCAACTGAATCGATAGAGTCAAGCGCTGATAAACAAATAATTG
AAAATGTCAAAGACTCAAAAATATCAATAACTGAAAAAGAAATTTTGTTAGCTACTAAGAAATCAAGCATTATGCTTAGT
GAAGATAAAATTGTCATAAAAATAGGTAATTCTTTAATTATACTTGATGATTCAAATATTTCGCTAGAGTCTGCAACTAT
TAATATAAAAAGCTCTGCTAATATAAATATTCAAGCATCACAGAACATAGATATAAAAAGTCTAAATAATAGTATCAAAG
CAGATGTAAACCTTAATGCTGAAGGGTTAGATGTAAATATTAAAGGAAGTGTAACAGCAAGTATAAAAGGTTCTACAGCA
ACAATGGTTGGATAA
ATGTCAAAAGCAGACCATATTTTCAACTTAGAAGAGCAAGGCTTGCTCATAGATATCAAAGATGATTCAAAAGGCTGCAC
TACGAAACTAGAGTCCTCTGGAAAAATCACTCATAATGCAACTGAATCGATAGAGTCAAGCGCTGATAAACAAATAATTG
AAAATGTCAAAGACTCAAAAATATCAATAACTGAAAAAGAAATTTTGTTAGCTACTAAGAAATCAAGCATTATGCTTAGT
GAAGATAAAATTGTCATAAAAATAGGTAATTCTTTAATTATACTTGATGATTCAAATATTTCGCTAGAGTCTGCAACTAT
TAATATAAAAAGCTCTGCTAATATAAATATTCAAGCATCACAGAACATAGATATAAAAAGTCTAAATAATAGTATCAAAG
CAGATGTAAACCTTAATGCTGAAGGGTTAGATGTAAATATTAAAGGAAGTGTAACAGCAAGTATAAAAGGTTCTACAGCA
ACAATGGTTGGATAA