Detailed information of effector
Summary
Effector ID | EFF00505 |
Effector type | - |
Cognate immunity protein | - |
Related T6SS (Type) | T6SS00395 (Type i3) |
Strain | Enterobacter cloacae subsp. cloacae ATCC 13047 |
Replicon | chromosome |
Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
Description | - |
Reference |
Bioinformatics investigation has been performed
External database links
Locus tag (Gene) | ECL_01541 (hcp) |
Coordinates (Strand) | 1562931..1563413 (+) |
NCBI ID | 495778061 |
RefSeq | NC_014121 |
Uniprot ID | W7PMH0_9ENTR, A0A0J6QBZ6_9ENTR, A0A1S2AGP3_9ENTR, A0A1M5IMD7_9GAMM, A0A0F1B2S9_9ENTR, A0A2S4SQA5_9ENTR, A0A2U3F0D5_9ENTR, A0A126PNA0_ENTCL, A0A0E3AAP6_ENTAS, A0A1J5WMM3_9ENTR, A0A0H3CHH7_ENTCC, A0A2J7S2P4_9ENTR |
KEGG ID | ern:BFV67_12850, lni:CWR52_21975, ecls:LI67_012800, eclg:EC036_26020, enc:ECL_01541 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_HCP | PF05638.14 | 7.7e-37 | 6..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-160 | MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLTKVELSVCKAGGQQVEYSRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTSGGKGAESSAGWNIKENKEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9458 | - | - |
Protein sequence: 161 a.a. .
>EFF00505 NC_014121:1562931-1563413 (Unknown) [Enterobacter cloacae subsp. cloacae ATCC 13047]
MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLT
KVELSVCKAGGQQVEYSRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTSGGKGAESSAGWNIKENKEA
*
MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLT
KVELSVCKAGGQQVEYSRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTSGGKGAESSAGWNIKENKEA
*
Nucleotide sequence: 483 bp .
>EFF00505 NC_014121:1562931-1563413 (Unknown) [Enterobacter cloacae subsp. cloacae ATCC 13047]
ATGGCTATTGATATGTTTCTGAAGGTCGAGGGTGTTACGGGCGAATCTAAAGATTCTAACCACACCGGCTGGACTGATAT
TACCTCCTTCTCCTGGGGCGCTTCCCAGCCAGGTAATATGAGCGTTGGCGGTGGCGGCGGTGCCGGTAAAGTTAACTTTA
ACGATCTGCACGTTAACGCTCTGATCGACAAATCCACCACAGCAATTCTGAAACACTGCGCCAGCGGTAAACACCTGACC
AAAGTTGAGCTGTCCGTCTGTAAAGCCGGTGGCCAGCAGGTGGAATACTCTCGCATTACCCTGGAAGACGTTCTGGTAAC
GTCTGTTCAGTACACCGGTGCAGACAACGGCGATACCGTTGGTGTGACCTATGCATTCCAGGCTGCGAAAGTGAAACAGC
AGTACTGGGAGCAGACCACCTCTGGTGGTAAAGGTGCTGAAAGCAGCGCTGGCTGGAACATCAAAGAAAACAAAGAAGCA
TAA
ATGGCTATTGATATGTTTCTGAAGGTCGAGGGTGTTACGGGCGAATCTAAAGATTCTAACCACACCGGCTGGACTGATAT
TACCTCCTTCTCCTGGGGCGCTTCCCAGCCAGGTAATATGAGCGTTGGCGGTGGCGGCGGTGCCGGTAAAGTTAACTTTA
ACGATCTGCACGTTAACGCTCTGATCGACAAATCCACCACAGCAATTCTGAAACACTGCGCCAGCGGTAAACACCTGACC
AAAGTTGAGCTGTCCGTCTGTAAAGCCGGTGGCCAGCAGGTGGAATACTCTCGCATTACCCTGGAAGACGTTCTGGTAAC
GTCTGTTCAGTACACCGGTGCAGACAACGGCGATACCGTTGGTGTGACCTATGCATTCCAGGCTGCGAAAGTGAAACAGC
AGTACTGGGAGCAGACCACCTCTGGTGGTAAAGGTGCTGAAAGCAGCGCTGGCTGGAACATCAAAGAAAACAAAGAAGCA
TAA