Detailed information of effector
Summary
| Effector ID | EFF00505  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00395 (Type i3) |
| Strain | Enterobacter cloacae subsp. cloacae ATCC 13047 |
| Replicon | chromosome |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | ECL_01541 (hcp) |
| Coordinates (Strand) | 1562931..1563413 (+) |
| NCBI ID | 495778061 |
| RefSeq | NC_014121 |
| Uniprot ID | W7PMH0_9ENTR, A0A0J6QBZ6_9ENTR, A0A1S2AGP3_9ENTR, A0A1M5IMD7_9GAMM, A0A0F1B2S9_9ENTR, A0A2S4SQA5_9ENTR, A0A2U3F0D5_9ENTR, A0A126PNA0_ENTCL, A0A0E3AAP6_ENTAS, A0A1J5WMM3_9ENTR, A0A0H3CHH7_ENTCC, A0A2J7S2P4_9ENTR |
| KEGG ID | ern:BFV67_12850, lni:CWR52_21975, ecls:LI67_012800, eclg:EC036_26020, enc:ECL_01541 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 7.7e-37 | 6..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-160 | MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLTKVELSVCKAGGQQVEYSRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTSGGKGAESSAGWNIKENKEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9458 | - | - |
Protein sequence: 161 a.a. .
>EFF00505 NC_014121:1562931-1563413 (Unknown) [Enterobacter cloacae subsp. cloacae ATCC 13047]
MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLT
KVELSVCKAGGQQVEYSRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTSGGKGAESSAGWNIKENKEA
*
MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLT
KVELSVCKAGGQQVEYSRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTSGGKGAESSAGWNIKENKEA
*
Nucleotide sequence: 483 bp .
>EFF00505 NC_014121:1562931-1563413 (Unknown) [Enterobacter cloacae subsp. cloacae ATCC 13047]
ATGGCTATTGATATGTTTCTGAAGGTCGAGGGTGTTACGGGCGAATCTAAAGATTCTAACCACACCGGCTGGACTGATAT
TACCTCCTTCTCCTGGGGCGCTTCCCAGCCAGGTAATATGAGCGTTGGCGGTGGCGGCGGTGCCGGTAAAGTTAACTTTA
ACGATCTGCACGTTAACGCTCTGATCGACAAATCCACCACAGCAATTCTGAAACACTGCGCCAGCGGTAAACACCTGACC
AAAGTTGAGCTGTCCGTCTGTAAAGCCGGTGGCCAGCAGGTGGAATACTCTCGCATTACCCTGGAAGACGTTCTGGTAAC
GTCTGTTCAGTACACCGGTGCAGACAACGGCGATACCGTTGGTGTGACCTATGCATTCCAGGCTGCGAAAGTGAAACAGC
AGTACTGGGAGCAGACCACCTCTGGTGGTAAAGGTGCTGAAAGCAGCGCTGGCTGGAACATCAAAGAAAACAAAGAAGCA
TAA
ATGGCTATTGATATGTTTCTGAAGGTCGAGGGTGTTACGGGCGAATCTAAAGATTCTAACCACACCGGCTGGACTGATAT
TACCTCCTTCTCCTGGGGCGCTTCCCAGCCAGGTAATATGAGCGTTGGCGGTGGCGGCGGTGCCGGTAAAGTTAACTTTA
ACGATCTGCACGTTAACGCTCTGATCGACAAATCCACCACAGCAATTCTGAAACACTGCGCCAGCGGTAAACACCTGACC
AAAGTTGAGCTGTCCGTCTGTAAAGCCGGTGGCCAGCAGGTGGAATACTCTCGCATTACCCTGGAAGACGTTCTGGTAAC
GTCTGTTCAGTACACCGGTGCAGACAACGGCGATACCGTTGGTGTGACCTATGCATTCCAGGCTGCGAAAGTGAAACAGC
AGTACTGGGAGCAGACCACCTCTGGTGGTAAAGGTGCTGAAAGCAGCGCTGGCTGGAACATCAAAGAAAACAAAGAAGCA
TAA