Detailed information of effector
Summary
| Effector ID | EFF00479  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00372 (Type i4b) |
| Strain | Edwardsiella tarda EIB202 |
| Replicon | chromosome |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | ETAE_RS11250 |
| Coordinates (Strand) | 2557455..2557946 (+) |
| NCBI ID | 269139776 |
| RefSeq | NC_013508 |
| Uniprot ID | UPI00003BF63C |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 2.8e-32 | 6..137 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MAFDTYIKLDKVDGESTDDKHKKWIEVLGFAWGAGNECTMESGTQGLNTGKAMMSVLRVTKWMDCASVKLASAAVQGQNFPTLELEICTQAGDKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQDQNGKAGGKIGPEGWSLITNKKK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9782 | - | - |
Protein sequence: 164 a.a. .
>EFF00479 NC_013508:2557455-2557946 (Unknown) [Edwardsiella tarda EIB202]
MAFDTYIKLDKVDGESTDDKHKKWIEVLGFAWGAGNECTMESGTQGLNTGKAMMSVLRVTKWMDCASVKLASAAVQGQNF
PTLELEICTQAGDKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQDQNGKAGGKIGPEGWSLITN
KKK*
MAFDTYIKLDKVDGESTDDKHKKWIEVLGFAWGAGNECTMESGTQGLNTGKAMMSVLRVTKWMDCASVKLASAAVQGQNF
PTLELEICTQAGDKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQDQNGKAGGKIGPEGWSLITN
KKK*
Nucleotide sequence: 492 bp .
>EFF00479 NC_013508:2557455-2557946 (Unknown) [Edwardsiella tarda EIB202]
ATGGCTTTTGATACTTATATCAAACTGGATAAGGTTGATGGGGAATCCACCGACGATAAGCACAAAAAATGGATTGAAGT
GCTGGGTTTTGCCTGGGGAGCCGGCAATGAATGCACGATGGAGAGCGGCACCCAGGGGCTGAATACCGGTAAGGCGATGA
TGTCGGTGCTGCGTGTCACCAAATGGATGGACTGCGCCAGTGTCAAGCTGGCCTCCGCCGCCGTGCAGGGGCAGAACTTT
CCCACGCTGGAGCTGGAGATTTGCACCCAGGCGGGCGATAAGTTCGCCTTCTGCATCTACAAATTTACGCATGTCGCCGT
CTCCAGCTATCAATGCTCAGGGGCCACGGGCGGCAGCGATCGCCCGCAGGAAACCATTGATTTCGCTTATAAAGAAGTGA
CCTGGGAATACGTTCCCCAGGATCAGAACGGCAAGGCGGGCGGCAAAATTGGTCCTGAGGGCTGGAGCCTGATTACCAAC
AAGAAAAAGTAA
ATGGCTTTTGATACTTATATCAAACTGGATAAGGTTGATGGGGAATCCACCGACGATAAGCACAAAAAATGGATTGAAGT
GCTGGGTTTTGCCTGGGGAGCCGGCAATGAATGCACGATGGAGAGCGGCACCCAGGGGCTGAATACCGGTAAGGCGATGA
TGTCGGTGCTGCGTGTCACCAAATGGATGGACTGCGCCAGTGTCAAGCTGGCCTCCGCCGCCGTGCAGGGGCAGAACTTT
CCCACGCTGGAGCTGGAGATTTGCACCCAGGCGGGCGATAAGTTCGCCTTCTGCATCTACAAATTTACGCATGTCGCCGT
CTCCAGCTATCAATGCTCAGGGGCCACGGGCGGCAGCGATCGCCCGCAGGAAACCATTGATTTCGCTTATAAAGAAGTGA
CCTGGGAATACGTTCCCCAGGATCAGAACGGCAAGGCGGGCGGCAAAATTGGTCCTGAGGGCTGGAGCCTGATTACCAAC
AAGAAAAAGTAA