Detailed information of effector
Summary
| Effector ID | EFF00430  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00343 (Type i4b) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Description | Consequently, the high expression level of tssD1 suggests that B. glumae BGR1 recognizes external stimuli such as the presence of E. coli as prey, and activates the T6SS group_1, which is involved in the antibacterial effect. |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | BGLU_RS01955 |
| Coordinates (Strand) | 403385..403888 (+) |
| NCBI ID | WP_012734481.1 |
| RefSeq | NC_012724 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 4.6e-41 | 5..138 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-167 | MLDIYLNFGNPAIKGESQDKDHSGWIELKSWDWSVTQPRSATSSTSGGHTAERCEHSDMVFTKELDMASPLLYQHASGGTTFDEVSIDFMRSDGDGKRVKYLEIKLKYVIISSVTPSVQKEGLPVEQFSLKYAAVQWKQTKQNIGGNQGGNTQGAWSLTKNDKTYAV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9807 | - | - |
Protein sequence: 168 a.a. .
>EFF00430 NC_012724:403385-403888 (Unknown) [Burkholderia glumae BGR1]
MLDIYLNFGNPAIKGESQDKDHSGWIELKSWDWSVTQPRSATSSTSGGHTAERCEHSDMVFTKELDMASPLLYQHASGGT
TFDEVSIDFMRSDGDGKRVKYLEIKLKYVIISSVTPSVQKEGLPVEQFSLKYAAVQWKQTKQNIGGNQGGNTQGAWSLTK
NDKTYAV*
MLDIYLNFGNPAIKGESQDKDHSGWIELKSWDWSVTQPRSATSSTSGGHTAERCEHSDMVFTKELDMASPLLYQHASGGT
TFDEVSIDFMRSDGDGKRVKYLEIKLKYVIISSVTPSVQKEGLPVEQFSLKYAAVQWKQTKQNIGGNQGGNTQGAWSLTK
NDKTYAV*
Nucleotide sequence: 504 bp .
>EFF00430 NC_012724:403385-403888 (Unknown) [Burkholderia glumae BGR1]
ATGTTAGATATCTATCTCAATTTCGGTAACCCGGCCATCAAGGGCGAGTCGCAGGACAAGGACCACTCGGGCTGGATTGA
ACTCAAGTCATGGGACTGGTCGGTCACGCAGCCGCGCTCGGCCACCTCGTCCACCTCGGGCGGCCACACCGCCGAGCGCT
GCGAACACAGCGACATGGTGTTCACGAAAGAGCTCGACATGGCGAGCCCGCTGCTGTACCAGCACGCATCGGGCGGCACG
ACCTTCGACGAAGTGTCGATCGACTTCATGCGTTCGGACGGCGACGGCAAGCGCGTCAAGTACCTCGAGATCAAGCTCAA
GTACGTGATCATCTCGAGCGTCACGCCGAGCGTGCAGAAGGAAGGCCTGCCGGTCGAGCAGTTCTCGCTGAAGTACGCTG
CGGTGCAGTGGAAGCAGACCAAGCAGAACATCGGCGGCAACCAGGGCGGCAACACCCAGGGCGCCTGGAGCCTCACGAAG
AACGACAAGACCTACGCGGTCTGA
ATGTTAGATATCTATCTCAATTTCGGTAACCCGGCCATCAAGGGCGAGTCGCAGGACAAGGACCACTCGGGCTGGATTGA
ACTCAAGTCATGGGACTGGTCGGTCACGCAGCCGCGCTCGGCCACCTCGTCCACCTCGGGCGGCCACACCGCCGAGCGCT
GCGAACACAGCGACATGGTGTTCACGAAAGAGCTCGACATGGCGAGCCCGCTGCTGTACCAGCACGCATCGGGCGGCACG
ACCTTCGACGAAGTGTCGATCGACTTCATGCGTTCGGACGGCGACGGCAAGCGCGTCAAGTACCTCGAGATCAAGCTCAA
GTACGTGATCATCTCGAGCGTCACGCCGAGCGTGCAGAAGGAAGGCCTGCCGGTCGAGCAGTTCTCGCTGAAGTACGCTG
CGGTGCAGTGGAAGCAGACCAAGCAGAACATCGGCGGCAACCAGGGCGGCAACACCCAGGGCGCCTGGAGCCTCACGAAG
AACGACAAGACCTACGCGGTCTGA