Detailed information of effector


Summary

Effector ID EFF00204 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00158 experimental (Type ii)
Strain Francisella tularensis subsp. novicida U112
Replicon chromosome
Sequence Protein sequence (384 a.a.); Nucleotide sequence (1152 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) FTN_1317 (IglI)
Coordinates (Strand) 1389274..1390425 (+)
NCBI ID 118497897
RefSeq NC_008601
Uniprot ID UPI0000E895AD
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-383 MSQIISTLNNIDLVTQDKVNLISNMQIQAKYENAEYKSFIDQLIDNLNTTKSIDIYNLFLSLNSEICLNLDTVDNISKIISSYLSILNTNFTRISPSESKQKNQLAEKGINKFLVTMDANFAQMQNQEKLLPNNIDSIIEIVQEVIIFFEKNNLNYNSDFKIQLNKTLRKIKSSLILKDQKNDTYSDKEAINQVEASITDQKNIQGSEKWKTLIEKIEVLKALVESERIFETSIVYNDIQNLLVNFDPKEYFPEIFFPLYKKIAPFIGNIHKNIDYYSSSIQWSIAQKMYNIDYKSFLDTLERMPENNFLNSSSDITKNFFYETSSEVEKTPIEEHKIIADTDAIKEEIVIKQRTNNKKNQNDSVEKISNEIDEDYFEDLFDI



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9963 - -



  Protein sequence: 384 a.a.    .

>EFF00204 NC_008601:1389274-1390425 [Francisella tularensis subsp. novicida U112]
MSQIISTLNNIDLVTQDKVNLISNMQIQAKYENAEYKSFIDQLIDNLNTTKSIDIYNLFLSLNSEICLNLDTVDNISKII
SSYLSILNTNFTRISPSESKQKNQLAEKGINKFLVTMDANFAQMQNQEKLLPNNIDSIIEIVQEVIIFFEKNNLNYNSDF
KIQLNKTLRKIKSSLILKDQKNDTYSDKEAINQVEASITDQKNIQGSEKWKTLIEKIEVLKALVESERIFETSIVYNDIQ
NLLVNFDPKEYFPEIFFPLYKKIAPFIGNIHKNIDYYSSSIQWSIAQKMYNIDYKSFLDTLERMPENNFLNSSSDITKNF
FYETSSEVEKTPIEEHKIIADTDAIKEEIVIKQRTNNKKNQNDSVEKISNEIDEDYFEDLFDI*

  Nucleotide sequence: 1152 bp    .

>EFF00204 NC_008601:1389274-1390425 [Francisella tularensis subsp. novicida U112]
ATGAGTCAGATAATATCTACACTAAATAATATTGATTTAGTAACTCAAGATAAAGTAAATCTGATTAGTAATATGCAAAT
ACAAGCAAAATATGAAAACGCTGAGTATAAGTCATTTATTGATCAATTAATAGATAATCTTAATACTACTAAAAGCATAG
ATATATATAACTTATTTCTATCTTTAAATTCAGAAATATGCCTCAATTTAGATACGGTTGATAATATCTCTAAAATTATT
AGCTCTTATTTATCTATTCTAAATACTAATTTCACAAGAATTAGTCCATCAGAATCAAAGCAAAAAAACCAGCTAGCTGA
AAAAGGAATAAACAAATTCTTAGTCACTATGGATGCAAATTTTGCGCAAATGCAGAATCAAGAAAAGTTGTTACCAAATA
ACATAGATTCTATTATAGAAATTGTACAGGAAGTAATAATATTTTTTGAGAAAAATAATTTAAATTATAATTCTGATTTT
AAAATCCAACTAAATAAGACTCTTAGAAAAATAAAAAGTTCTTTGATTTTAAAAGATCAAAAAAATGATACGTATTCCGA
TAAAGAAGCAATAAATCAAGTTGAAGCAAGTATCACAGATCAAAAAAACATACAAGGCTCTGAGAAATGGAAAACTCTTA
TTGAAAAAATTGAAGTTTTAAAAGCTCTAGTCGAAAGTGAAAGAATATTTGAAACATCTATTGTTTATAATGATATACAA
AACTTATTAGTTAACTTCGATCCTAAAGAGTATTTTCCTGAAATTTTCTTTCCATTATACAAGAAGATAGCTCCTTTTAT
TGGCAATATCCATAAAAACATAGACTACTACTCATCAAGTATTCAGTGGAGTATAGCTCAGAAGATGTACAACATAGATT
ATAAGAGTTTTTTAGATACTCTTGAGAGAATGCCCGAAAATAATTTTTTAAATTCTTCTTCTGATATAACTAAAAATTTC
TTTTATGAAACATCCTCAGAGGTGGAAAAAACTCCTATCGAAGAACATAAAATAATTGCAGATACAGATGCTATCAAAGA
AGAAATAGTAATAAAACAGCGAACCAATAATAAAAAAAACCAGAATGATTCGGTAGAAAAAATTTCAAATGAGATAGATG
AAGACTATTTTGAAGATCTTTTTGACATATAA