Detailed information of effector


Summary

Effector ID EFF00147 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00115 experimental (Type i4b)
Strain Burkholderia thailandensis E264
Replicon chromosome
Sequence Protein sequence (933 a.a.); Nucleotide sequence (2799 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) BTH_RS26010
Coordinates (Strand) 3097448..3100246 (-)
NCBI ID 83718826
RefSeq NC_007651
Uniprot ID UPI0000667CEC
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 8.6e-57 37..356
DUF2345 PF10106.11 1.6e-39 745..899
T6SS_Vgr PF13296.8 6.8e-31 582..687
Phage_base_V PF04717.14 6.3e-08 446..511
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-932 MSVVTQFTSLFSAANCLYSLDGAGEIASLQIERWVGRETLSDNFQWDVYALATDPGLDLDAMLGQRVTIRTALADGTSAVRSGLVAQAECIGYDAGLARYYLQLVPWLAALAHGRDERTFVRQGIADVLGAVFAPYGAIARWRFTADANQRIAELGARDYRVQYRTHTHVDFVRHVLAEAGLGFCFVEDAEAPAGHAMLIFDDSAQLPEDDTSARMGGVPQRLSGTATEPDDAIVGIGQSLSLTADRVTLISSDYRGNQSTTATASLGSPAGSRELYDDVGPEAFDSLREADDAARRHADAIISAARFWTGYSTLRTARVGRALRIAGATWRMPRGGAQAPDAFVLTRVDQIGVNNLPATVMERIERGLGPLPLVNLDARVLAQAKAGGYANRFDAVPRDQAWRPTLEDGTGQRLNPVPTALGAQTAIVVGPQGESRPGSTGPVHTDAQGRLRLRYHWQADGDTGTYPTRAMQRLASQGHGLQQTQRIGHEVLVQFVNGLVHRPIVLGGLFNGRGEGGEAPTPGGEAGQPLDESIYTQAADHVASAQGNLAGGHSPAWHGAGGGAKRHNHAGALSGFKSQGFDGQGYNQLVADDTDRMGRMQMATTHAATQLNIGHLRHQADNYLGSFRGQGVELRSDAYGALRGARGVLISSYAPTGPSQPAGDASALQSLLAQQATLAKLLDKSADTHKTLPFAAQRGAEQAGQSSMNGDAAPLDALRKSFATTVGADGYAQASAEASSRSAGNALPHTGDAVLGIEAKGGHGLLAGQSLQWTVGETLTVGSGSDTNLAVSRTLRIHSGQGIGWLAGANGVQGVGMSVIAGKDDLTLQAQHDVMALRARDDLKVASIGADVEIAAKQTVRLAVSGGAHLTIEGGNVTFGCPGSLVVHAAQHTFVGPDQLAPALPQFPEKVCVECLKHAMQSGSALAGKAI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7830 - -


  Protein sequence: 933 a.a.    .

>EFF00147 NC_007651:c3100246-3097448 (Unknown) [Burkholderia thailandensis E264]
MSVVTQFTSLFSAANCLYSLDGAGEIASLQIERWVGRETLSDNFQWDVYALATDPGLDLDAMLGQRVTIRTALADGTSAV
RSGLVAQAECIGYDAGLARYYLQLVPWLAALAHGRDERTFVRQGIADVLGAVFAPYGAIARWRFTADANQRIAELGARDY
RVQYRTHTHVDFVRHVLAEAGLGFCFVEDAEAPAGHAMLIFDDSAQLPEDDTSARMGGVPQRLSGTATEPDDAIVGIGQS
LSLTADRVTLISSDYRGNQSTTATASLGSPAGSRELYDDVGPEAFDSLREADDAARRHADAIISAARFWTGYSTLRTARV
GRALRIAGATWRMPRGGAQAPDAFVLTRVDQIGVNNLPATVMERIERGLGPLPLVNLDARVLAQAKAGGYANRFDAVPRD
QAWRPTLEDGTGQRLNPVPTALGAQTAIVVGPQGESRPGSTGPVHTDAQGRLRLRYHWQADGDTGTYPTRAMQRLASQGH
GLQQTQRIGHEVLVQFVNGLVHRPIVLGGLFNGRGEGGEAPTPGGEAGQPLDESIYTQAADHVASAQGNLAGGHSPAWHG
AGGGAKRHNHAGALSGFKSQGFDGQGYNQLVADDTDRMGRMQMATTHAATQLNIGHLRHQADNYLGSFRGQGVELRSDAY
GALRGARGVLISSYAPTGPSQPAGDASALQSLLAQQATLAKLLDKSADTHKTLPFAAQRGAEQAGQSSMNGDAAPLDALR
KSFATTVGADGYAQASAEASSRSAGNALPHTGDAVLGIEAKGGHGLLAGQSLQWTVGETLTVGSGSDTNLAVSRTLRIHS
GQGIGWLAGANGVQGVGMSVIAGKDDLTLQAQHDVMALRARDDLKVASIGADVEIAAKQTVRLAVSGGAHLTIEGGNVTF
GCPGSLVVHAAQHTFVGPDQLAPALPQFPEKVCVECLKHAMQSGSALAGKAI*

  Nucleotide sequence: 2799 bp    .

>EFF00147 NC_007651:c3100246-3097448 (Unknown) [Burkholderia thailandensis E264]
ATGAGCGTGGTCACGCAATTCACGTCGCTTTTCAGCGCTGCCAATTGTCTCTATTCCCTCGATGGGGCGGGCGAAATCGC
GTCGCTGCAGATCGAGCGCTGGGTGGGGCGCGAGACGCTCTCCGACAATTTCCAGTGGGACGTCTACGCGCTCGCGACCG
ATCCCGGTCTCGATCTCGACGCGATGCTCGGCCAGCGCGTGACGATTCGCACCGCACTCGCGGACGGCACGAGCGCGGTG
CGCAGCGGGCTCGTGGCGCAAGCCGAGTGCATCGGCTACGACGCCGGCCTCGCGCGGTACTACCTGCAGCTCGTGCCGTG
GCTCGCCGCGCTCGCGCACGGGCGCGACGAGCGCACGTTCGTGCGGCAGGGCATCGCGGACGTGCTCGGCGCGGTGTTCG
CGCCGTACGGCGCGATCGCCCGCTGGCGCTTCACGGCGGACGCGAACCAGCGTATCGCGGAGCTCGGCGCGCGCGACTAC
CGCGTGCAGTACCGGACCCACACGCATGTCGATTTCGTTCGGCACGTGCTCGCCGAAGCGGGGCTCGGCTTTTGCTTCGT
CGAAGACGCGGAAGCGCCCGCCGGCCACGCGATGCTGATCTTCGACGACAGCGCGCAACTGCCCGAGGACGACACGTCCG
CGCGCATGGGCGGCGTGCCGCAGCGGCTGAGCGGCACGGCGACGGAGCCGGACGACGCGATCGTCGGCATCGGGCAGTCG
CTGTCGCTCACCGCGGATCGCGTCACGCTGATCAGCAGCGATTACCGCGGCAATCAGTCGACGACTGCGACGGCGAGCCT
CGGCAGCCCGGCCGGATCGCGCGAACTGTACGACGACGTCGGGCCGGAGGCGTTCGACAGCCTGCGCGAAGCCGACGACG
CCGCGCGCCGGCACGCGGACGCGATCATTTCCGCGGCGCGCTTCTGGACGGGCTACAGCACGTTGCGCACCGCGCGCGTC
GGCCGCGCGCTGCGCATCGCGGGCGCGACGTGGCGCATGCCGCGCGGCGGCGCGCAGGCGCCCGACGCGTTCGTGCTGAC
GCGCGTCGATCAAATCGGCGTCAACAATCTGCCCGCGACCGTGATGGAACGCATCGAGCGCGGCCTCGGCCCGCTGCCGC
TCGTGAATCTCGATGCGCGCGTGCTCGCGCAGGCGAAGGCGGGTGGCTATGCGAACCGGTTCGATGCCGTGCCGCGCGAC
CAGGCATGGCGCCCGACGCTGGAAGACGGCACCGGGCAGCGGCTGAACCCCGTGCCGACGGCGCTCGGCGCGCAGACGGC
GATCGTCGTCGGGCCGCAGGGCGAGTCGCGGCCGGGCTCGACGGGCCCGGTGCACACCGATGCGCAGGGCAGACTGCGGC
TGCGCTATCACTGGCAGGCGGACGGCGACACGGGCACCTATCCGACGCGCGCGATGCAGCGGCTCGCGAGCCAGGGCCAT
GGGCTGCAGCAGACACAGCGAATCGGCCACGAAGTGCTCGTGCAGTTCGTCAACGGCCTCGTGCACCGGCCGATCGTGCT
CGGCGGGCTGTTCAACGGCCGAGGCGAGGGCGGCGAAGCGCCGACGCCCGGCGGCGAAGCGGGGCAGCCGCTCGACGAAT
CGATTTACACGCAGGCCGCCGATCATGTGGCGAGCGCGCAAGGCAATCTCGCGGGCGGCCATAGCCCCGCATGGCACGGC
GCGGGCGGCGGCGCGAAGCGCCACAATCATGCGGGCGCGCTGTCCGGCTTCAAGAGCCAGGGGTTCGACGGGCAGGGCTA
CAACCAACTCGTCGCGGACGATACCGATCGCATGGGCCGCATGCAGATGGCGACGACGCACGCGGCGACCCAGCTCAACA
TCGGCCACCTGCGCCATCAGGCCGACAACTATCTCGGCAGTTTTCGCGGGCAAGGCGTCGAGCTGCGCTCGGACGCGTAC
GGCGCGCTGCGCGGCGCGCGCGGCGTGCTGATCTCCAGCTATGCGCCGACGGGGCCGTCGCAGCCGGCGGGCGACGCGTC
GGCGCTGCAGTCGCTGCTCGCGCAACAGGCGACGCTCGCGAAGCTCCTCGACAAATCGGCCGATACGCACAAGACCTTGC
CGTTCGCCGCGCAGCGCGGCGCGGAGCAGGCCGGGCAGTCCTCGATGAACGGCGACGCCGCGCCGCTCGACGCGCTCAGG
AAGAGCTTCGCGACGACGGTCGGCGCAGACGGCTACGCGCAGGCGTCTGCCGAGGCGTCGAGCCGCTCGGCGGGCAATGC
GCTGCCGCATACGGGCGACGCGGTGCTCGGGATCGAGGCGAAGGGCGGCCACGGTCTGCTGGCGGGCCAGTCACTGCAAT
GGACGGTGGGCGAGACGCTGACCGTCGGCAGCGGCAGCGACACGAATCTCGCGGTCAGTCGGACGCTGCGCATTCACAGC
GGACAGGGCATCGGCTGGCTCGCCGGCGCGAACGGCGTGCAAGGCGTCGGCATGAGCGTGATCGCCGGCAAGGACGATCT
GACGCTGCAGGCGCAGCATGACGTGATGGCGCTGCGCGCGCGCGACGATCTGAAGGTCGCGTCGATCGGCGCGGATGTCG
AGATCGCGGCGAAGCAGACCGTGCGCCTCGCGGTCAGCGGCGGCGCGCATCTGACGATCGAAGGCGGCAACGTCACGTTC
GGCTGCCCGGGCTCGCTCGTCGTCCACGCGGCGCAGCACACGTTCGTCGGGCCGGATCAACTGGCCCCCGCGCTGCCGCA
GTTTCCCGAGAAAGTGTGCGTCGAGTGCCTGAAGCACGCGATGCAATCGGGCAGCGCCCTCGCGGGCAAGGCGATCTGA