Detailed information of effector
Summary
| Effector ID | EFF00141  |
| Effector type | Tse |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00115 (Type i4b) |
| Strain | Burkholderia thailandensis E264 |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Description | - |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | BTH_RS21555 |
| Coordinates (Strand) | 2056900..2057376 (-) |
| NCBI ID | 83721528 |
| RefSeq | NC_007651 |
| Uniprot ID | UPI00006686EF |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MSMACTGTAFYQAFKQNMEALGLDVPSSWYGTQTALLTRVGALVAAVDRLGKDATLAELIGATTLPEKLLAAGGIYASWYVGAAVGSLMVATGKFTQCSSSTDISRAVQRFQFEAAIRVPSSLLFHLQTHPEIFDDNATNRLMYARRGLSTKQPEFAK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9773 | - | - |
Protein sequence: 159 a.a. .
>EFF00141 NC_007651:c2057376-2056900 Type VI Secretion System Effector (Tse) [Burkholderia thailandensis E264]
MSMACTGTAFYQAFKQNMEALGLDVPSSWYGTQTALLTRVGALVAAVDRLGKDATLAELIGATTLPEKLLAAGGIYASWY
VGAAVGSLMVATGKFTQCSSSTDISRAVQRFQFEAAIRVPSSLLFHLQTHPEIFDDNATNRLMYARRGLSTKQPEFAK*
MSMACTGTAFYQAFKQNMEALGLDVPSSWYGTQTALLTRVGALVAAVDRLGKDATLAELIGATTLPEKLLAAGGIYASWY
VGAAVGSLMVATGKFTQCSSSTDISRAVQRFQFEAAIRVPSSLLFHLQTHPEIFDDNATNRLMYARRGLSTKQPEFAK*
Nucleotide sequence: 477 bp .
>EFF00141 NC_007651:c2057376-2056900 Type VI Secretion System Effector (Tse) [Burkholderia thailandensis E264]
ATGTCTATGGCCTGCACGGGAACAGCGTTCTACCAAGCCTTCAAGCAAAACATGGAAGCGCTAGGGCTCGATGTGCCGTC
GAGCTGGTACGGCACCCAAACCGCCCTGCTTACACGCGTCGGCGCACTCGTCGCAGCTGTCGACCGGCTCGGCAAGGATG
CAACGCTTGCGGAACTGATCGGCGCAACGACTTTGCCTGAGAAACTGCTAGCGGCCGGCGGAATCTATGCATCGTGGTAT
GTCGGCGCGGCCGTCGGTAGCCTCATGGTCGCCACCGGCAAATTTACGCAGTGCAGCAGCTCGACTGACATCTCACGAGC
CGTCCAACGATTCCAGTTCGAGGCGGCGATCCGTGTTCCGAGCAGCCTGCTGTTTCACCTGCAGACGCACCCGGAAATCT
TCGATGACAACGCAACGAACCGCCTCATGTATGCGCGCCGCGGCCTGTCGACAAAGCAACCCGAATTCGCGAAATGA
ATGTCTATGGCCTGCACGGGAACAGCGTTCTACCAAGCCTTCAAGCAAAACATGGAAGCGCTAGGGCTCGATGTGCCGTC
GAGCTGGTACGGCACCCAAACCGCCCTGCTTACACGCGTCGGCGCACTCGTCGCAGCTGTCGACCGGCTCGGCAAGGATG
CAACGCTTGCGGAACTGATCGGCGCAACGACTTTGCCTGAGAAACTGCTAGCGGCCGGCGGAATCTATGCATCGTGGTAT
GTCGGCGCGGCCGTCGGTAGCCTCATGGTCGCCACCGGCAAATTTACGCAGTGCAGCAGCTCGACTGACATCTCACGAGC
CGTCCAACGATTCCAGTTCGAGGCGGCGATCCGTGTTCCGAGCAGCCTGCTGTTTCACCTGCAGACGCACCCGGAAATCT
TCGATGACAACGCAACGAACCGCCTCATGTATGCGCGCCGCGGCCTGTCGACAAAGCAACCCGAATTCGCGAAATGA