Detailed information of effector


Summary

Effector ID EFF00136 experimental
Effector type Tse
Cognate immunity protein -
Related T6SS (Type) T6SS00115 experimental (Type i4b)
Strain Burkholderia thailandensis E264
Replicon chromosome
Sequence Protein sequence (747 a.a.); Nucleotide sequence (2241 bp)
Description -
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) BTH_RS00455
Coordinates (Strand) 100474..102714 (+)
NCBI ID 83716109
RefSeq NC_007650
Uniprot ID UPI00006672A6
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF3274 PF11678.10 3.9e-131 417..724
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-746 MNGINDQCFTAAHGAGVTMANRPGDRPVPIPRDLPGVVIFIHGVNDPGAAYATVERGLCQGLNERLSRSDLRPAEYGREYAEAIKAKDRKSPFFDSKIANDPDMYLYRRAESGGAHSMFLPFYWGYRASDNEIAKINHPGEIKSRVADSDGNLMTRGQYQDIHGNRLDAHFGKGGGFFANATNNIPQMYSRGFEPDKLERTVMQNALAGNTIFAGKSPERRYFVLAAARLANLIKTIRTIQPSALALEHGMDPQHETITVMGHSQGTIITLLAQAMLKQQGQRCVDCIIMVDTPYSLQFTKDGSQQTGHAKLKTLVDIVNAVTSEPHTIPDLAELMIDSAHSCGRAGQNWSQTQGKRLDKSGKHWITFDERDNRGKVYLYFCPEDTVVGLDKVRGIGTFGVPDEVPADGAAASRGKTMPAMTALEPKRFFQRMWTRLERDQDGRGRRSKVAVGTPPARVPVRDPFQRLTPGPDTDGTMLGTLVESGKNMALQASFKRNDIRLINGEQLKPAYEPDLYGGEVQKGGQVPGHADVAGLMRPDDVTKNVALGNQYAKFQWKDVATTDDPGASIEPHKQAFNRGRPVDEQSHNWRIVPSRSLGSMLSAAATGGRYQTYVIQREETPDEVRKRMRTDADQLEANNYHSGVLLSSENHRWVTAMDVAIGQAVTLDDPDWRQLLLLMADWKMTPDVYRNIQKCKNFERLDEHTREFVKACVDYYKTGRFPDEKYVPLILPPLVTSELKVESKT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9294 - -


  Protein sequence: 747 a.a.    .

>EFF00136 NC_007650:100474-102714 Type VI Secretion System Effector (Tse) [Burkholderia thailandensis E264]
MNGINDQCFTAAHGAGVTMANRPGDRPVPIPRDLPGVVIFIHGVNDPGAAYATVERGLCQGLNERLSRSDLRPAEYGREY
AEAIKAKDRKSPFFDSKIANDPDMYLYRRAESGGAHSMFLPFYWGYRASDNEIAKINHPGEIKSRVADSDGNLMTRGQYQ
DIHGNRLDAHFGKGGGFFANATNNIPQMYSRGFEPDKLERTVMQNALAGNTIFAGKSPERRYFVLAAARLANLIKTIRTI
QPSALALEHGMDPQHETITVMGHSQGTIITLLAQAMLKQQGQRCVDCIIMVDTPYSLQFTKDGSQQTGHAKLKTLVDIVN
AVTSEPHTIPDLAELMIDSAHSCGRAGQNWSQTQGKRLDKSGKHWITFDERDNRGKVYLYFCPEDTVVGLDKVRGIGTFG
VPDEVPADGAAASRGKTMPAMTALEPKRFFQRMWTRLERDQDGRGRRSKVAVGTPPARVPVRDPFQRLTPGPDTDGTMLG
TLVESGKNMALQASFKRNDIRLINGEQLKPAYEPDLYGGEVQKGGQVPGHADVAGLMRPDDVTKNVALGNQYAKFQWKDV
ATTDDPGASIEPHKQAFNRGRPVDEQSHNWRIVPSRSLGSMLSAAATGGRYQTYVIQREETPDEVRKRMRTDADQLEANN
YHSGVLLSSENHRWVTAMDVAIGQAVTLDDPDWRQLLLLMADWKMTPDVYRNIQKCKNFERLDEHTREFVKACVDYYKTG
RFPDEKYVPLILPPLVTSELKVESKT*

  Nucleotide sequence: 2241 bp    .

>EFF00136 NC_007650:100474-102714 Type VI Secretion System Effector (Tse) [Burkholderia thailandensis E264]
ATGAACGGTATCAACGATCAGTGTTTCACCGCCGCCCACGGGGCGGGCGTGACGATGGCGAATCGGCCGGGCGACCGGCC
CGTGCCGATTCCGCGCGATCTGCCGGGCGTGGTGATCTTCATTCACGGCGTCAACGATCCCGGTGCGGCTTATGCCACTG
TGGAGCGCGGGCTGTGCCAGGGGCTCAATGAGCGATTGTCGCGAAGCGATTTGCGGCCGGCGGAATATGGCAGGGAATAT
GCTGAAGCCATCAAAGCGAAAGACCGGAAGAGCCCGTTCTTCGATAGCAAAATCGCCAACGATCCGGACATGTATCTGTA
TCGACGTGCGGAAAGTGGCGGTGCCCACAGCATGTTCCTGCCGTTCTACTGGGGCTATCGGGCATCCGACAACGAAATCG
CGAAGATCAACCATCCGGGCGAGATCAAGAGCCGCGTGGCGGACAGCGACGGCAACCTGATGACGCGCGGCCAGTATCAG
GACATCCACGGCAACCGGCTTGACGCCCATTTCGGCAAGGGCGGCGGGTTTTTCGCCAACGCGACGAACAACATTCCGCA
GATGTATAGCCGGGGTTTCGAACCGGACAAGCTGGAGCGCACGGTCATGCAAAACGCGCTCGCCGGCAATACGATCTTCG
CCGGCAAGTCGCCCGAGCGCCGTTACTTCGTGCTTGCCGCGGCTCGCCTGGCGAATCTCATCAAGACCATTCGGACCATT
CAGCCCTCCGCGCTCGCGCTCGAACATGGAATGGACCCTCAGCACGAAACGATCACGGTGATGGGGCACAGCCAGGGCAC
GATCATCACGCTGCTCGCGCAGGCGATGCTCAAGCAGCAAGGGCAGCGCTGCGTGGATTGCATCATCATGGTCGATACGC
CGTACAGCCTGCAGTTCACCAAGGACGGCAGCCAGCAAACCGGGCACGCGAAGCTCAAGACGCTGGTCGACATCGTCAAC
GCGGTGACGAGCGAGCCGCATACGATTCCGGATCTGGCCGAACTGATGATCGATTCGGCCCATTCGTGCGGCCGGGCCGG
ACAGAACTGGAGCCAGACGCAGGGAAAGCGGCTGGACAAGAGCGGCAAGCACTGGATCACGTTCGACGAGCGCGACAACC
GCGGCAAGGTCTATCTGTACTTCTGCCCGGAAGACACCGTGGTCGGCCTCGACAAGGTGCGCGGGATCGGCACGTTCGGC
GTGCCCGACGAGGTTCCGGCCGATGGCGCGGCGGCCAGCCGGGGCAAAACGATGCCTGCGATGACGGCGCTTGAGCCGAA
GCGCTTCTTTCAGCGCATGTGGACGCGGCTCGAGCGCGACCAGGACGGCAGGGGGAGGCGCTCGAAGGTCGCCGTCGGCA
CGCCGCCCGCGCGCGTGCCGGTTCGCGATCCGTTTCAGCGATTGACGCCGGGCCCCGACACGGACGGCACGATGCTTGGC
ACCTTGGTCGAATCCGGCAAGAACATGGCGCTGCAGGCGTCGTTCAAGCGCAACGACATTCGCCTCATCAACGGCGAGCA
ACTGAAACCGGCGTACGAGCCCGATCTGTACGGGGGCGAGGTTCAGAAAGGCGGACAGGTGCCGGGGCACGCCGATGTCG
CCGGGTTGATGCGTCCGGACGACGTGACGAAGAACGTCGCGCTCGGCAACCAGTACGCGAAGTTCCAGTGGAAGGACGTT
GCGACGACGGACGACCCGGGCGCCAGCATCGAGCCGCACAAGCAGGCGTTCAATCGCGGCCGTCCGGTCGACGAGCAGTC
GCATAACTGGCGCATCGTGCCGAGCCGGTCGCTCGGCTCGATGCTGTCGGCGGCCGCCACGGGCGGACGGTATCAGACGT
ACGTGATCCAGCGCGAGGAGACGCCGGACGAGGTTCGCAAGCGCATGCGCACCGATGCCGATCAACTGGAAGCGAACAAC
TATCATTCGGGCGTGCTGCTCAGTTCGGAGAACCATCGCTGGGTCACGGCGATGGATGTGGCGATCGGTCAGGCGGTGAC
GCTGGATGATCCGGACTGGCGGCAGTTGTTGCTTTTGATGGCGGATTGGAAGATGACGCCGGACGTGTATCGAAATATCC
AGAAATGCAAGAACTTCGAGCGCTTGGACGAACACACGCGCGAATTCGTGAAAGCGTGTGTCGATTACTACAAGACCGGC
CGATTTCCCGACGAGAAGTATGTACCTCTCATCCTGCCACCGCTCGTGACCAGCGAACTGAAGGTCGAGAGCAAAACATG
A