Detailed information of effector


Summary

Effector ID EFF00092 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00075 experimental (Type i1)
Strain Burkholderia pseudomallei K96243
Replicon chromosome
Sequence Protein sequence (747 a.a.); Nucleotide sequence (2241 bp)
Description Hcp protein
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) BPS_RS25320
Coordinates (Strand) 1633710..1635950 (-)
NCBI ID 53722235
RefSeq NC_006351
Uniprot ID Q63L01_BURPS
KEGG ID bps:BPSS1212
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF3274 PF11678.10 3.7e-132 417..725
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-746 MNGINDQCFTAARGAGVTMANRPGDRPVPIPRDLPGVVIFIHGVNDPGAAYATVERGLCQGLNERLSRSDLRPGEYGGEYAEAIKAKDQKSPFFDSRIANDPDMYLYRRAETGGTHSMFLPFYWGYRASDDEIAKISHPGEVKSRVADSDGNLMTRGQYQDIHGNRLDAHFGKGGGFFANATNNIPQMYSPGFEPDKLERTVMQNALAGNTIFAGKSPDRRYFVLAAARLASLIRTIRAVRPSALALEHGMDPRHETITVMGHSQGTIITLLAQAMLRQQGQRCVDCIIMVDTPYSLQFTQDGSQQTGHAKLKTLVDIVNAVTSEPHTIPELAELMIDSAHSCGRAGQNWSKTQGKRPDKGGKHWITFDERDNRGKVYLYFCPEDTVVGLDKVRGIGTFGVPDEVPADGAAASRGKTMPAMTVLEPKRFFQRMWTRLERDQDGRGKRSKVAVGTPPARVPVRDPFQRLTPGPDTDGTMLGTLVESGKNMALQASFKRNDIRFINGEQLKPAYEPDLYGGEVRKGGQVPGHADVAGLMRPDDVTKNVALGNQYAKFKWKDVATTDDPGAGIEPHKQAFNRGRPVDEQSHNWRIVPSRSLGSMLSAAATGGRYQTYVIQREETPDEVRKRMRTDADQLEANNYHSGVLLSSENHRWVTAMDVAIGQAVTLDDPDWRRLLLLMADWKMTPDAMDKIAKCNAYGRLETHTREFIDACAKYYQNGSFPAEKFVPLTLPPLVTSELKVDKRA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9430 - -


  Protein sequence: 747 a.a.    .

>EFF00092 NC_006351:c1635950-1633710 (Unknown) [Burkholderia pseudomallei K96243]
MNGINDQCFTAARGAGVTMANRPGDRPVPIPRDLPGVVIFIHGVNDPGAAYATVERGLCQGLNERLSRSDLRPGEYGGEY
AEAIKAKDQKSPFFDSRIANDPDMYLYRRAETGGTHSMFLPFYWGYRASDDEIAKISHPGEVKSRVADSDGNLMTRGQYQ
DIHGNRLDAHFGKGGGFFANATNNIPQMYSPGFEPDKLERTVMQNALAGNTIFAGKSPDRRYFVLAAARLASLIRTIRAV
RPSALALEHGMDPRHETITVMGHSQGTIITLLAQAMLRQQGQRCVDCIIMVDTPYSLQFTQDGSQQTGHAKLKTLVDIVN
AVTSEPHTIPELAELMIDSAHSCGRAGQNWSKTQGKRPDKGGKHWITFDERDNRGKVYLYFCPEDTVVGLDKVRGIGTFG
VPDEVPADGAAASRGKTMPAMTVLEPKRFFQRMWTRLERDQDGRGKRSKVAVGTPPARVPVRDPFQRLTPGPDTDGTMLG
TLVESGKNMALQASFKRNDIRFINGEQLKPAYEPDLYGGEVRKGGQVPGHADVAGLMRPDDVTKNVALGNQYAKFKWKDV
ATTDDPGAGIEPHKQAFNRGRPVDEQSHNWRIVPSRSLGSMLSAAATGGRYQTYVIQREETPDEVRKRMRTDADQLEANN
YHSGVLLSSENHRWVTAMDVAIGQAVTLDDPDWRRLLLLMADWKMTPDAMDKIAKCNAYGRLETHTREFIDACAKYYQNG
SFPAEKFVPLTLPPLVTSELKVDKRA*

  Nucleotide sequence: 2241 bp    .

>EFF00092 NC_006351:c1635950-1633710 (Unknown) [Burkholderia pseudomallei K96243]
ATGAACGGAATCAACGATCAGTGTTTCACCGCCGCCCGCGGGGCGGGCGTGACGATGGCGAATCGGCCGGGCGACCGGCC
CGTGCCGATTCCGCGCGATCTGCCGGGCGTGGTGATCTTCATCCACGGCGTCAACGATCCCGGGGCGGCTTATGCCACCG
TGGAGCGCGGGCTGTGCCAGGGGCTCAATGAGCGATTGTCGCGAAGCGATCTGCGGCCGGGGGAGTATGGCGGGGAATAT
GCCGAAGCCATCAAAGCGAAAGACCAAAAGAGCCCGTTTTTCGATAGCAGAATCGCCAACGATCCGGACATGTATCTGTA
TCGACGTGCGGAGACCGGCGGCACTCACAGCATGTTCCTGCCGTTCTACTGGGGCTATCGGGCGTCCGATGACGAGATCG
CGAAGATCAGCCATCCGGGCGAGGTCAAGAGCCGCGTCGCGGACAGCGACGGCAACCTGATGACGCGCGGCCAGTATCAG
GACATCCACGGCAACCGGCTCGACGCCCATTTCGGCAAGGGCGGCGGGTTTTTCGCCAACGCGACGAACAACATCCCGCA
GATGTACAGCCCGGGCTTCGAACCGGACAAGCTCGAGCGCACGGTCATGCAAAACGCGCTGGCCGGCAATACGATCTTCG
CCGGCAAGTCGCCCGATCGCCGCTATTTCGTGCTGGCCGCGGCTCGCCTGGCGAGCCTCATCCGGACCATTCGGGCCGTC
CGGCCTTCCGCGCTCGCGCTGGAGCACGGCATGGATCCTCGACACGAAACGATCACGGTGATGGGGCACAGCCAGGGCAC
GATCATCACGCTGCTCGCGCAGGCGATGCTCAGGCAGCAAGGGCAGCGCTGCGTCGATTGCATCATCATGGTCGATACGC
CGTACAGCCTGCAGTTCACCCAGGACGGCAGCCAGCAAACCGGGCACGCGAAGCTCAAGACGCTGGTCGACATCGTCAAC
GCGGTGACGAGCGAGCCGCATACGATTCCGGAGCTGGCCGAACTGATGATCGATTCGGCCCATTCGTGCGGCCGGGCCGG
ACAGAACTGGAGCAAGACGCAGGGAAAGCGGCCGGACAAGGGCGGCAAGCACTGGATCACGTTCGACGAGCGCGACAACC
GCGGCAAGGTCTATCTGTACTTTTGCCCGGAAGATACCGTGGTCGGCCTCGACAAGGTGCGCGGGATCGGCACGTTCGGC
GTGCCCGACGAGGTGCCGGCCGATGGCGCGGCGGCCAGCCGGGGCAAAACGATGCCCGCGATGACGGTGCTTGAGCCGAA
GCGCTTCTTTCAGCGCATGTGGACGCGGCTCGAGCGCGACCAGGACGGCAGGGGAAAGCGCTCGAAGGTCGCCGTCGGCA
CGCCGCCCGCGCGCGTGCCGGTTCGCGACCCGTTTCAGCGATTGACGCCGGGCCCCGACACGGACGGCACGATGCTTGGC
ACCTTGGTCGAATCCGGCAAGAACATGGCGCTGCAGGCATCGTTCAAGCGCAACGACATTCGCTTCATCAACGGCGAGCA
ACTGAAACCGGCGTACGAGCCCGATCTGTACGGGGGCGAGGTTCGGAAGGGCGGACAGGTGCCCGGGCACGCCGATGTCG
CCGGGTTGATGCGTCCGGACGACGTGACGAAAAACGTCGCGCTCGGCAACCAGTACGCGAAGTTCAAATGGAAAGACGTC
GCGACGACGGACGATCCGGGCGCCGGCATCGAGCCGCACAAGCAGGCATTCAATCGCGGCCGTCCGGTCGACGAGCAGTC
GCATAACTGGCGCATCGTGCCGAGCCGGTCGCTCGGCTCGATGCTGTCGGCGGCCGCCACGGGCGGACGGTATCAGACGT
ACGTGATCCAGCGCGAGGAGACGCCGGACGAGGTTCGCAAGCGCATGCGTACCGATGCCGATCAACTGGAAGCGAACAAC
TATCATTCGGGCGTACTGCTCAGTTCGGAGAACCATCGCTGGGTCACGGCGATGGACGTGGCGATCGGTCAGGCGGTGAC
GCTGGATGATCCGGACTGGCGGCGGTTGTTGCTTTTGATGGCGGATTGGAAGATGACGCCGGATGCAATGGATAAGATCG
CGAAATGCAACGCTTATGGCCGGCTTGAGACGCATACGAGGGAATTTATCGATGCGTGCGCGAAGTACTATCAAAATGGC
TCGTTCCCTGCGGAGAAGTTTGTGCCGCTTACTTTGCCACCACTCGTCACCAGCGAACTGAAAGTTGACAAGAGAGCATG
A