Detailed information of effector


Summary

Effector ID EFF00088 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS00070 experimental (Type i1)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome
Sequence Protein sequence (170 a.a.); Nucleotide sequence (510 bp)
Description Hcp protein
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) BMA_RS19605
Coordinates (Strand) 759926..760435 (-)
NCBI ID 77358963
RefSeq NC_006349
Uniprot ID A0A0H2XFE5_BURMA
KEGG ID bma:BMAA0742
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 7.4e-23 6..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-169 MLAGIYLKVKGKTQGEIKGSVVQEGHDGKIHILAFKNDYDMPARLQEGLTPAAAARGTITLTKEMDRSSPQFLQALGKREMMEEFEITIHRPKTDTTGGDLTELLFTYKFEKVLITHMDQYSPTPHKDDSNGIKEGLLGYIEEIKFAYSGYSLEHAESGIAGAANWTNG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9812 - -



  Protein sequence: 170 a.a.    .

>EFF00088 NC_006349:c760435-759926 [Burkholderia mallei ATCC 23344]
MLAGIYLKVKGKTQGEIKGSVVQEGHDGKIHILAFKNDYDMPARLQEGLTPAAAARGTITLTKEMDRSSPQFLQALGKRE
MMEEFEITIHRPKTDTTGGDLTELLFTYKFEKVLITHMDQYSPTPHKDDSNGIKEGLLGYIEEIKFAYSGYSLEHAESGI
AGAANWTNG*

  Nucleotide sequence: 510 bp    .

>EFF00088 NC_006349:c760435-759926 [Burkholderia mallei ATCC 23344]
ATGCTGGCCGGAATATATCTCAAGGTCAAAGGAAAAACCCAGGGGGAAATCAAAGGCTCCGTCGTTCAGGAAGGTCATGA
CGGGAAGATCCACATCCTCGCCTTCAAGAACGACTACGACATGCCCGCCAGGCTCCAGGAAGGCCTGACGCCCGCCGCCG
CCGCTCGCGGCACGATCACGTTGACGAAGGAAATGGACAGATCGTCGCCGCAATTCCTGCAGGCGCTCGGCAAGCGCGAG
ATGATGGAAGAGTTCGAGATCACGATCCACCGTCCGAAGACGGATACAACAGGTGGGGACCTGACCGAACTCCTGTTCAC
GTACAAGTTCGAAAAAGTGCTGATCACCCACATGGACCAATACTCGCCCACGCCGCACAAAGACGATAGCAACGGCATCA
AGGAAGGCTTGCTCGGCTATATCGAGGAGATCAAGTTCGCGTATTCGGGATACTCGTTGGAACACGCGGAATCGGGCATC
GCGGGCGCCGCAAACTGGACGAATGGCTGA