Detailed information of effector
Summary
| Effector ID | EFF00065  |
| Effector type | - |
| Cognate immunity protein | - |
| Related T6SS (Type) | T6SS00047 (Type i1) |
| Strain | Helicobacter hepaticus ATCC 51449 |
| Replicon | chromosome |
| Sequence | Protein sequence (170 a.a.); Nucleotide sequence (510 bp) |
| Description | Hcp |
| Reference |
Experimental investigation has been performed.
Bioinformatics investigation has been performedExternal database links
| Locus tag (Gene) | HH_RS01205 |
| Coordinates (Strand) | 234543..235052 (-) |
| NCBI ID | 32265742 |
| RefSeq | NC_004917 |
| Uniprot ID | UPI00001AB1DE |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 7.8e-33 | 6..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-169 | MAQPAYIKIEGVTQGLISSGASTQESIGNRYQAGHEDEIMAQEISHIVTVPTDTQSGQPSGQRVHRPFIFTCSLNKAVPLLYNALTKGERLNNVEVHWFRTSIGGGAEHYFTTKLEDAIITDIDLIMPNAQDTSNNNKTELFRVSLNYRKIIWEHVVAGTSGSDDWRNA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9540 | - | - |
Protein sequence: 170 a.a. .
>EFF00065 NC_004917:c235052-234543 (Unknown) [Helicobacter hepaticus ATCC 51449]
MAQPAYIKIEGVTQGLISSGASTQESIGNRYQAGHEDEIMAQEISHIVTVPTDTQSGQPSGQRVHRPFIFTCSLNKAVPL
LYNALTKGERLNNVEVHWFRTSIGGGAEHYFTTKLEDAIITDIDLIMPNAQDTSNNNKTELFRVSLNYRKIIWEHVVAGT
SGSDDWRNA*
MAQPAYIKIEGVTQGLISSGASTQESIGNRYQAGHEDEIMAQEISHIVTVPTDTQSGQPSGQRVHRPFIFTCSLNKAVPL
LYNALTKGERLNNVEVHWFRTSIGGGAEHYFTTKLEDAIITDIDLIMPNAQDTSNNNKTELFRVSLNYRKIIWEHVVAGT
SGSDDWRNA*
Nucleotide sequence: 510 bp .
>EFF00065 NC_004917:c235052-234543 (Unknown) [Helicobacter hepaticus ATCC 51449]
ATGGCGCAGCCAGCATATATTAAAATTGAAGGTGTTACACAAGGACTTATTTCTAGTGGGGCTTCTACGCAAGAGAGCAT
AGGTAATCGTTACCAAGCAGGACACGAAGATGAAATTATGGCTCAAGAGATTTCTCATATTGTAACTGTTCCCACAGATA
CACAAAGCGGACAACCATCAGGTCAAAGGGTGCATAGACCCTTTATTTTTACCTGTTCTCTCAATAAAGCTGTTCCTTTA
CTTTACAATGCCCTCACAAAGGGTGAAAGATTAAACAATGTAGAAGTACATTGGTTTAGGACATCAATAGGTGGTGGAGC
AGAACATTACTTCACTACAAAATTAGAAGATGCTATTATTACAGACATAGACCTTATTATGCCAAATGCACAAGATACAA
GCAATAATAACAAAACTGAGCTCTTTAGGGTTTCTCTTAATTATCGAAAAATTATTTGGGAACATGTTGTTGCAGGAACG
AGCGGAAGTGATGACTGGAGAAATGCTTAA
ATGGCGCAGCCAGCATATATTAAAATTGAAGGTGTTACACAAGGACTTATTTCTAGTGGGGCTTCTACGCAAGAGAGCAT
AGGTAATCGTTACCAAGCAGGACACGAAGATGAAATTATGGCTCAAGAGATTTCTCATATTGTAACTGTTCCCACAGATA
CACAAAGCGGACAACCATCAGGTCAAAGGGTGCATAGACCCTTTATTTTTACCTGTTCTCTCAATAAAGCTGTTCCTTTA
CTTTACAATGCCCTCACAAAGGGTGAAAGATTAAACAATGTAGAAGTACATTGGTTTAGGACATCAATAGGTGGTGGAGC
AGAACATTACTTCACTACAAAATTAGAAGATGCTATTATTACAGACATAGACCTTATTATGCCAAATGCACAAGATACAA
GCAATAATAACAAAACTGAGCTCTTTAGGGTTTCTCTTAATTATCGAAAAATTATTTGGGAACATGTTGTTGCAGGAACG
AGCGGAAGTGATGACTGGAGAAATGCTTAA