Detailed information of component protein
Summary
| Component ID | T6CP259666 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS01006  (Type i4b) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome I |
| Sequence | Protein sequence (262 a.a.); Nucleotide sequence (786 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AQ15_1811 |
| Coordinate (Strand) | 2062195..2062980 (-) |
| NCBI ID | AJX28872.1 |
| GenBank | CP009538 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 1.2e-58 | 32..230 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-209 | MSYAPSLFGGNTPPPAPQTASSTDAGFQARSLVDLLYDGFFMLFLLKNGREPNDASEFGTRIQEFLSEFERGAKKLNIAADDVYAAKFAFCAAIDESVLSSPFKIRADWERRPLQLVLFGEQLAGEKFYQYLEECRAQGAARLQSLEVFHMCLLLGFQGKYLLEGPEKLAYLTARLGDEIANMKGKRAPFAPHWPLPDQISHRLKREVP |
| Transmembrane helix | 210-232 | LWAIGAVFALVGLLAFVGLNTYL |
| Inside | 233-261 | KDSTVRALAPYSQVIKVGPESANLTISLP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9689 | - | - |
Protein sequence: 262 a.a.
>T6CP259666 CP009538:c2062980-2062195 [Burkholderia pseudomallei K96243] [TssL]
MSYAPSLFGGNTPPPAPQTASSTDAGFQARSLVDLLYDGFFMLFLLKNGREPNDASEFGTRIQEFLSEFERGAKKLNIAA
DDVYAAKFAFCAAIDESVLSSPFKIRADWERRPLQLVLFGEQLAGEKFYQYLEECRAQGAARLQSLEVFHMCLLLGFQGK
YLLEGPEKLAYLTARLGDEIANMKGKRAPFAPHWPLPDQISHRLKREVPLWAIGAVFALVGLLAFVGLNTYLKDSTVRAL
APYSQVIKVGPESANLTISLP*
MSYAPSLFGGNTPPPAPQTASSTDAGFQARSLVDLLYDGFFMLFLLKNGREPNDASEFGTRIQEFLSEFERGAKKLNIAA
DDVYAAKFAFCAAIDESVLSSPFKIRADWERRPLQLVLFGEQLAGEKFYQYLEECRAQGAARLQSLEVFHMCLLLGFQGK
YLLEGPEKLAYLTARLGDEIANMKGKRAPFAPHWPLPDQISHRLKREVPLWAIGAVFALVGLLAFVGLNTYLKDSTVRAL
APYSQVIKVGPESANLTISLP*
Nucleotide sequence: 786 bp
>T6CP259666 CP009538:c2062980-2062195 [Burkholderia pseudomallei K96243] [TssL]
ATGAGTTACGCGCCCTCCCTCTTCGGCGGCAACACGCCGCCCCCCGCGCCGCAAACGGCTTCGTCGACCGACGCCGGCTT
CCAGGCGCGCTCGCTCGTCGATCTGCTGTACGACGGCTTCTTCATGCTGTTCCTGCTGAAGAACGGCCGCGAGCCGAACG
ACGCGTCGGAATTCGGCACGCGCATTCAGGAATTCCTGAGCGAGTTCGAACGCGGCGCGAAGAAGCTCAACATCGCCGCC
GACGACGTCTATGCGGCGAAGTTCGCGTTTTGCGCGGCGATCGACGAATCGGTACTGTCGTCGCCGTTCAAGATCCGCGC
GGACTGGGAGCGCCGGCCGTTGCAGCTCGTGCTGTTCGGCGAGCAACTCGCGGGCGAGAAGTTCTATCAGTACCTCGAAG
AATGCCGCGCGCAGGGCGCGGCGCGGCTGCAGTCGCTCGAGGTGTTCCATATGTGCCTGCTGCTCGGCTTCCAGGGCAAG
TATCTGCTCGAAGGGCCGGAAAAGCTCGCGTATCTGACCGCACGGCTTGGCGACGAGATCGCGAACATGAAGGGCAAGCG
CGCACCGTTCGCGCCGCATTGGCCGCTGCCGGACCAGATCTCGCACCGGCTCAAGCGCGAGGTGCCGCTGTGGGCGATCG
GGGCGGTGTTCGCGCTCGTCGGGCTGCTGGCGTTCGTCGGGCTGAATACGTATTTGAAAGACAGTACCGTGCGGGCGCTC
GCGCCTTATTCGCAAGTCATCAAGGTGGGGCCGGAGTCGGCTAATTTGACGATTTCGTTGCCTTGA
ATGAGTTACGCGCCCTCCCTCTTCGGCGGCAACACGCCGCCCCCCGCGCCGCAAACGGCTTCGTCGACCGACGCCGGCTT
CCAGGCGCGCTCGCTCGTCGATCTGCTGTACGACGGCTTCTTCATGCTGTTCCTGCTGAAGAACGGCCGCGAGCCGAACG
ACGCGTCGGAATTCGGCACGCGCATTCAGGAATTCCTGAGCGAGTTCGAACGCGGCGCGAAGAAGCTCAACATCGCCGCC
GACGACGTCTATGCGGCGAAGTTCGCGTTTTGCGCGGCGATCGACGAATCGGTACTGTCGTCGCCGTTCAAGATCCGCGC
GGACTGGGAGCGCCGGCCGTTGCAGCTCGTGCTGTTCGGCGAGCAACTCGCGGGCGAGAAGTTCTATCAGTACCTCGAAG
AATGCCGCGCGCAGGGCGCGGCGCGGCTGCAGTCGCTCGAGGTGTTCCATATGTGCCTGCTGCTCGGCTTCCAGGGCAAG
TATCTGCTCGAAGGGCCGGAAAAGCTCGCGTATCTGACCGCACGGCTTGGCGACGAGATCGCGAACATGAAGGGCAAGCG
CGCACCGTTCGCGCCGCATTGGCCGCTGCCGGACCAGATCTCGCACCGGCTCAAGCGCGAGGTGCCGCTGTGGGCGATCG
GGGCGGTGTTCGCGCTCGTCGGGCTGCTGGCGTTCGTCGGGCTGAATACGTATTTGAAAGACAGTACCGTGCGGGCGCTC
GCGCCTTATTCGCAAGTCATCAAGGTGGGGCCGGAGTCGGCTAATTTGACGATTTCGTTGCCTTGA