Detailed information of component protein


Summary

Component ID T6CP259665
Component protein type TssK
T6SS ID (Type) T6SS01006 experimental (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_1812
Coordinate (Strand) 2062977..2064323 (-)
NCBI ID AJX30002.1
GenBank CP009538
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 3.9e-140 19..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESIQAIQPYNWGVRSVRFDRDALGSNVLRASELSLVFPDGALYSAPQADELPPPIALDTLPEGINEFTFYLALHPLRETGSNYADDRDAGFVSRFVSEQASVADHFTDAAEADITFLKTNVKLIAHSEPRDQLLSIPLVRVRRTATSGFEIDDGFVPPCLAIEASPILHQRLRQLIDALQAKVNALYGFHREPTKNIIEFRSGDIASFWLLHTASAAFAALAHLHQHSALHPERLFQELLRLAGQLMTFSKGYVLADLPAYRHDDPGPGFARLDSILRELLETVISTRYFAITLEEVRPSFHVGRLDSGKIDDKTAFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLAYTPQVPPAIPVRPGACYFALDARSPLYERMLQAQSAMIYAPSGINDLKFELIAVTS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -


  Protein sequence: 449 a.a.    

>T6CP259665 CP009538:c2064323-2062977 [Burkholderia pseudomallei K96243] [TssK]
MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESIQAIQPYNWGVRSVRFDRDALGSNVLRASELSLVFPDGALYSAPQA
DELPPPIALDTLPEGINEFTFYLALHPLRETGSNYADDRDAGFVSRFVSEQASVADHFTDAAEADITFLKTNVKLIAHSE
PRDQLLSIPLVRVRRTATSGFEIDDGFVPPCLAIEASPILHQRLRQLIDALQAKVNALYGFHREPTKNIIEFRSGDIASF
WLLHTASAAFAALAHLHQHSALHPERLFQELLRLAGQLMTFSKGYVLADLPAYRHDDPGPGFARLDSILRELLETVISTR
YFAITLEEVRPSFHVGRLDSGKIDDKTAFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLAYTPQVPPA
IPVRPGACYFALDARSPLYERMLQAQSAMIYAPSGINDLKFELIAVTS*

  Nucleotide sequence: 1347 bp    

>T6CP259665 CP009538:c2064323-2062977 [Burkholderia pseudomallei K96243] [TssK]
ATGAGTTATTCGGCCAAGGTGCTCTGGGGAGAAGGCCTCTTTCTGAGGCCGCAGCACTTTCAGCGGCAGGACGCGTATCA
CGAAGCGCGCCTGTTCGAATCGATCCAGGCGATCCAGCCGTACAACTGGGGCGTGCGTTCGGTGCGGTTCGATCGCGACG
CGCTCGGCAGCAACGTGCTGCGCGCGAGCGAACTGTCGCTCGTGTTTCCGGACGGCGCGCTCTACTCCGCGCCGCAAGCC
GACGAACTGCCGCCGCCCATCGCGCTCGACACGCTGCCCGAAGGCATCAACGAATTCACGTTCTACCTCGCGCTGCACCC
GCTGCGCGAGACCGGCTCGAACTACGCGGACGACCGCGACGCCGGCTTCGTGTCGCGCTTCGTCAGCGAACAGGCGAGCG
TTGCCGATCACTTCACCGACGCCGCGGAAGCGGACATCACGTTCCTGAAGACGAACGTGAAGCTGATCGCGCACAGCGAG
CCGCGCGACCAGTTGCTGTCGATCCCGCTCGTACGCGTGCGCCGCACCGCGACGTCCGGCTTCGAGATCGACGACGGCTT
CGTGCCGCCGTGCCTCGCGATCGAGGCGTCGCCGATCCTGCACCAGCGCCTGCGCCAGTTGATCGACGCGCTGCAGGCGA
AGGTGAATGCACTGTACGGTTTCCATCGCGAGCCGACGAAGAACATCATCGAGTTCCGCTCGGGCGACATCGCATCGTTC
TGGCTGCTGCACACGGCGAGCGCCGCGTTCGCCGCGCTCGCGCACCTGCACCAGCATTCGGCCTTGCATCCGGAGCGGCT
GTTCCAGGAACTACTGCGCCTCGCGGGCCAGTTGATGACGTTCTCGAAGGGCTACGTGCTCGCCGATCTGCCCGCGTACC
GGCATGACGATCCGGGCCCGGGCTTCGCGCGGCTCGATTCGATCCTGCGCGAGCTGCTCGAGACCGTGATCTCGACGCGC
TACTTCGCGATCACGCTCGAGGAAGTGCGGCCGTCGTTCCATGTCGGGCGGCTCGACTCGGGCAAGATCGACGACAAGAC
CGCGTTCTATCTCGCGGTGTCGGCCGACATGCCGTCGGTCGAACTCGTCGATGCGGTGCCCGCGCGCTTCAAGGTGGGCG
CGCCGGACGACGTCGACAAGCTCGTGCTCTCCGCGATGCCGGGCGTGCGCCTCGCGTACACGCCGCAGGTGCCGCCCGCG
ATTCCCGTGCGCCCGGGCGCATGCTATTTCGCACTCGATGCGCGCAGCCCGCTCTATGAGCGGATGCTGCAGGCCCAGTC
GGCGATGATCTATGCGCCGTCCGGAATCAACGATCTCAAATTCGAACTGATCGCCGTCACGTCATGA