Detailed information of component protein


Summary

Component ID T6CP259662
Component protein type TssC
T6SS ID (Type) T6SS01006 experimental (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (497 a.a.); Nucleotide sequence (1491 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_1816
Coordinate (Strand) 2066664..2068154 (+)
NCBI ID AJX26767.1
GenBank CP009538
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.6e-134 68..370
VipB_2 PF18945.2 1e-46 380..490
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-496 MNQQTAAAQSTGVQAGTESSLLDEIVEKSKVAKSESEHARAKDLIGELVSQVLDGTVVVSDNLSATIDARVAELDRLISSQLSAVMHAAEFQRLESTWRGLDYLVKESNTGSTIKIKALHAPKRDLVRDFKNATEFDQSALFKKVYEEEFGTFGGSPFGVLVGDYEISRQPEDQYFIEQMSHVAAAAHAPFIASAAPELLGLESFADLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGLTLPRFLGRLPFNPKDGAIAESFNFVEDVDGTDHDKYLWCNASWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRIAHYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDDATQEQKAQFPLREASVQVSEIPGKPGAYRSVAFLRPHFQLDELSISLRLVADLPKPANS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9218 - -


  Protein sequence: 497 a.a.    

>T6CP259662 CP009538:2066664-2068154 [Burkholderia pseudomallei K96243] [TssC]
MNQQTAAAQSTGVQAGTESSLLDEIVEKSKVAKSESEHARAKDLIGELVSQVLDGTVVVSDNLSATIDARVAELDRLISS
QLSAVMHAAEFQRLESTWRGLDYLVKESNTGSTIKIKALHAPKRDLVRDFKNATEFDQSALFKKVYEEEFGTFGGSPFGV
LVGDYEISRQPEDQYFIEQMSHVAAAAHAPFIASAAPELLGLESFADLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPFNPKDGAIAESFNFVEDVDGTDHDKYLWCNASWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRIA
HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDDATQEQKAQFPLREASVQVSEIPGKPGAYRSVAFLRPHFQLDEL
SISLRLVADLPKPANS*

  Nucleotide sequence: 1491 bp    

>T6CP259662 CP009538:2066664-2068154 [Burkholderia pseudomallei K96243] [TssC]
ATGAACCAGCAAACGGCTGCGGCCCAATCCACCGGCGTTCAAGCCGGCACGGAATCCTCGCTGCTCGACGAGATCGTCGA
GAAGAGCAAGGTCGCGAAATCCGAATCCGAGCATGCGCGCGCGAAGGATCTGATCGGCGAGCTCGTCAGTCAGGTGCTTG
ACGGCACGGTGGTGGTGTCGGACAACCTGTCGGCGACCATCGACGCGCGCGTCGCGGAGCTCGATCGCCTGATCTCGTCG
CAGCTCTCGGCCGTGATGCACGCGGCGGAGTTCCAGCGTCTCGAGAGCACCTGGCGCGGGCTCGATTACCTGGTGAAGGA
AAGCAACACCGGCTCGACGATCAAGATCAAGGCGCTGCACGCGCCGAAGCGCGATCTCGTGCGCGATTTCAAGAACGCGA
CCGAGTTCGATCAGAGCGCGCTCTTCAAGAAGGTGTACGAAGAGGAATTCGGCACGTTCGGCGGCTCGCCGTTCGGCGTG
CTGGTGGGCGACTACGAGATCTCGCGCCAGCCGGAAGACCAGTACTTCATCGAGCAGATGTCGCACGTCGCGGCCGCCGC
GCACGCGCCGTTCATCGCGTCGGCGGCGCCCGAGCTGCTCGGGCTCGAATCGTTCGCGGATCTCGGCAAGCCGCGCGATC
TCGGCAAGGTGTTCGATACCGTTGAATACGCGAAGTGGAAGTCGTTCCGCGATTCCGAGGATTCGCGCTACGTCGGCCTC
ACGCTGCCGCGCTTTCTCGGCCGCCTGCCGTTCAATCCGAAGGACGGCGCGATCGCGGAGAGCTTCAACTTCGTCGAGGA
CGTCGACGGCACCGATCACGACAAGTACCTGTGGTGCAACGCGTCGTGGGCGTTCGCCGCGCGCCTGACGGCGGCGTTCG
ACGACTTCGGCTGGTGCGCGGCGATTCGCGGCGTCGAAGGCGGCGGCCTCGTCGAGGATCTGCCGACCCACACGTTCAAG
ACCGACGACGGCGAAATCGCGCTCAAGTGCCCGACCGAGATCGCGATCACCGACCGCCGCGAGAAGGAACTGAGCGATCT
CGGTTTCATCCCGCTCGTGCACTGCAAGAATTCCGATTACGCCGCGTTCTTTGCCGCGCAGTCGGTGCAGAAACCCAAGA
AATACAGCACCGACAGCGCCAACGCGAACGCCGTCCTGTCCGCTCAGCTGCAGTACATCTTCTCGGTATCGCGCATCGCG
CATTACCTGAAGGCGATGATGCGCGACAAGATCGGCAGCTTCGCGTCCGCGCAGAACGTCGAAACGTTCCTCAATCGCTG
GATCTCGCAGTACGTGTTGCTCGACGACGACGCGACGCAGGAACAGAAGGCGCAGTTCCCGCTGCGCGAGGCCTCCGTAC
AAGTGTCAGAGATTCCGGGCAAGCCGGGTGCGTATCGTTCGGTCGCGTTTTTGCGTCCGCACTTCCAGCTCGACGAGTTG
TCGATTTCTCTGCGCCTTGTCGCTGATCTGCCCAAACCGGCAAATTCATAA