Detailed information of component protein


Summary

Component ID T6CP259661
Component protein type TssD
T6SS ID (Type) T6SS01006 experimental (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AQ15_1817
Coordinate (Strand) 2068227..2068730 (+)
NCBI ID AJX26890.1
GenBank CP009538
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 2.1e-39 8..138

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-167 MLHMHLKFGSPAIKGESADKDHEGWIELKSWDHSIVQPRSATASTAGGHTATRCEHGDMVFTKEIDSSSPLLYQHASGGTTFDEVTIDFLRADGEGQRVKYLEIKLKYVIISSIAPSVHTEGLPVETFSLKYAAVQWKQTQQKIGGNQGGNTQGAWSLTKNDKTYAV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9558 - -



  Protein sequence: 168 a.a.    

>T6CP259661 CP009538:2068227-2068730 [Burkholderia pseudomallei K96243] [TssD]
MLHMHLKFGSPAIKGESADKDHEGWIELKSWDHSIVQPRSATASTAGGHTATRCEHGDMVFTKEIDSSSPLLYQHASGGT
TFDEVTIDFLRADGEGQRVKYLEIKLKYVIISSIAPSVHTEGLPVETFSLKYAAVQWKQTQQKIGGNQGGNTQGAWSLTK
NDKTYAV*

  Nucleotide sequence: 504 bp    

>T6CP259661 CP009538:2068227-2068730 [Burkholderia pseudomallei K96243] [TssD]
ATGTTACACATGCATTTGAAGTTCGGTAGTCCCGCCATCAAGGGCGAGTCCGCCGACAAGGACCACGAAGGCTGGATCGA
GCTGAAATCCTGGGATCACTCGATCGTTCAGCCGCGTTCGGCGACCGCGTCGACGGCGGGCGGCCACACGGCGACGCGTT
GCGAGCACGGCGACATGGTGTTCACGAAGGAAATCGATTCGTCGAGCCCGCTGCTGTATCAGCACGCGTCGGGCGGCACC
ACGTTCGACGAAGTGACGATCGATTTCCTGCGCGCGGACGGCGAAGGCCAGCGCGTGAAGTATCTCGAGATCAAGCTGAA
GTACGTGATCATCTCGAGCATCGCGCCGAGCGTGCATACCGAAGGCCTGCCGGTCGAGACCTTCTCGCTGAAGTACGCCG
CGGTCCAGTGGAAGCAGACGCAGCAGAAGATCGGCGGCAACCAGGGCGGCAACACGCAGGGCGCCTGGAGCCTCACGAAG
AACGACAAGACCTACGCGGTCTAA