Detailed information of component protein
Summary
| Component ID | T6CP259660 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01006  (Type i4b) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome I |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AQ15_1818 |
| Coordinate (Strand) | 2068788..2069270 (+) |
| NCBI ID | AJX27939.1 |
| GenBank | CP009538 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1e-21 | 32..132 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-160 | MKRFEPSFLDKLFDDEPHVPAPAAMRQLSLEELKNTVARDVEAILNTRIALTEEDLAELPECQRSVLTYGLNDFAGLSLASHYDRTFICKSIQQAIARHEPRLQQVQVAFELNEQSTNALYFAIQALLVVHPAEEPVTFDAMLQPSTLQYSVTRSRAAKV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9878 | - | - |
Protein sequence: 161 a.a.
>T6CP259660 CP009538:2068788-2069270 [Burkholderia pseudomallei K96243] [TssE]
MKRFEPSFLDKLFDDEPHVPAPAAMRQLSLEELKNTVARDVEAILNTRIALTEEDLAELPECQRSVLTYGLNDFAGLSLA
SHYDRTFICKSIQQAIARHEPRLQQVQVAFELNEQSTNALYFAIQALLVVHPAEEPVTFDAMLQPSTLQYSVTRSRAAKV
*
MKRFEPSFLDKLFDDEPHVPAPAAMRQLSLEELKNTVARDVEAILNTRIALTEEDLAELPECQRSVLTYGLNDFAGLSLA
SHYDRTFICKSIQQAIARHEPRLQQVQVAFELNEQSTNALYFAIQALLVVHPAEEPVTFDAMLQPSTLQYSVTRSRAAKV
*
Nucleotide sequence: 483 bp
>T6CP259660 CP009538:2068788-2069270 [Burkholderia pseudomallei K96243] [TssE]
ATGAAACGTTTCGAACCGAGCTTCCTCGACAAGCTGTTCGACGACGAACCGCACGTGCCGGCGCCCGCCGCGATGCGGCA
GTTGTCGTTGGAGGAGCTGAAGAACACGGTCGCGCGCGACGTCGAGGCGATCCTCAACACGCGCATCGCGCTGACCGAAG
AAGATCTCGCCGAGCTGCCCGAATGCCAGCGCTCGGTGCTGACCTACGGGCTGAACGATTTCGCCGGCCTGAGCCTCGCG
AGCCACTACGATCGCACGTTCATCTGCAAATCGATTCAGCAGGCGATCGCGCGGCACGAGCCGAGGCTGCAGCAGGTGCA
GGTGGCGTTCGAGCTGAACGAGCAGTCGACGAACGCGCTCTATTTCGCGATCCAGGCGCTGCTCGTCGTGCATCCCGCCG
AGGAACCGGTGACCTTCGATGCGATGCTGCAGCCGTCGACGTTGCAATATTCGGTGACGCGTTCGCGCGCCGCCAAGGTG
TGA
ATGAAACGTTTCGAACCGAGCTTCCTCGACAAGCTGTTCGACGACGAACCGCACGTGCCGGCGCCCGCCGCGATGCGGCA
GTTGTCGTTGGAGGAGCTGAAGAACACGGTCGCGCGCGACGTCGAGGCGATCCTCAACACGCGCATCGCGCTGACCGAAG
AAGATCTCGCCGAGCTGCCCGAATGCCAGCGCTCGGTGCTGACCTACGGGCTGAACGATTTCGCCGGCCTGAGCCTCGCG
AGCCACTACGATCGCACGTTCATCTGCAAATCGATTCAGCAGGCGATCGCGCGGCACGAGCCGAGGCTGCAGCAGGTGCA
GGTGGCGTTCGAGCTGAACGAGCAGTCGACGAACGCGCTCTATTTCGCGATCCAGGCGCTGCTCGTCGTGCATCCCGCCG
AGGAACCGGTGACCTTCGATGCGATGCTGCAGCCGTCGACGTTGCAATATTCGGTGACGCGTTCGCGCGCCGCCAAGGTG
TGA