Detailed information of component protein


Summary

Component ID T6CP259659
Component protein type TssF
T6SS ID (Type) T6SS01006 experimental (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (613 a.a.); Nucleotide sequence (1839 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_1819
Coordinate (Strand) 2069350..2071188 (+)
NCBI ID AJX29729.1
GenBank CP009538
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.7e-188 2..608
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-612 MEELLPYYERELSFLRRYSLEFANRYPKIAARLAQTGEQCEDPHVERMIESFALLGARINKKLDDEYPEFTEALVEVLYPHYLRPFPSCSIAQFGAPHAFAELTEPRIVERGTELKSRAIRGVQCRFRTAYDVTLAPIRLADARYGSVAVAPAAARLPGNATGVISIAFESTSPQLDLAALKLGKLRAHLHGEQSFVAALADCLFAHALACYVEPDRGGRWIALGKTPFEHAGFDETDALIDYPARSHPAYRLLTEYFAFPDKFNFVDFDLGALARRAGPCRQLTLHIALRDVRGDSHVARLLDLLSASHFRLFCTPVVNLFRQHGEPIRVDHRAVSYPVIGDARRAFAYEVYSIDSVHLVRQRADRETLVEFRPFYSLHHGEAAQAGHYWFARRNDDVARKSPGYETEISVVDVDFEPGAPQTDTLSLDLTCTNRDLPAALATGLDGGDLFIDGGEQPGPIALLRRPTPSARFERGHAAHWRLVSHLALNHVSLAEEGLAALKEALVLYDLRRSAVSTRHIDGIVGIEQKSAVQWLPGKPFATFVRGVEIRLAIDDEHFVGSSLATFVRMIDAFFGLYVHLNSFVQLIVVSRRTGEEIMRCKPRSGESILA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9919 - -


  Protein sequence: 613 a.a.    

>T6CP259659 CP009538:2069350-2071188 [Burkholderia pseudomallei K96243] [TssF]
MEELLPYYERELSFLRRYSLEFANRYPKIAARLAQTGEQCEDPHVERMIESFALLGARINKKLDDEYPEFTEALVEVLYP
HYLRPFPSCSIAQFGAPHAFAELTEPRIVERGTELKSRAIRGVQCRFRTAYDVTLAPIRLADARYGSVAVAPAAARLPGN
ATGVISIAFESTSPQLDLAALKLGKLRAHLHGEQSFVAALADCLFAHALACYVEPDRGGRWIALGKTPFEHAGFDETDAL
IDYPARSHPAYRLLTEYFAFPDKFNFVDFDLGALARRAGPCRQLTLHIALRDVRGDSHVARLLDLLSASHFRLFCTPVVN
LFRQHGEPIRVDHRAVSYPVIGDARRAFAYEVYSIDSVHLVRQRADRETLVEFRPFYSLHHGEAAQAGHYWFARRNDDVA
RKSPGYETEISVVDVDFEPGAPQTDTLSLDLTCTNRDLPAALATGLDGGDLFIDGGEQPGPIALLRRPTPSARFERGHAA
HWRLVSHLALNHVSLAEEGLAALKEALVLYDLRRSAVSTRHIDGIVGIEQKSAVQWLPGKPFATFVRGVEIRLAIDDEHF
VGSSLATFVRMIDAFFGLYVHLNSFVQLIVVSRRTGEEIMRCKPRSGESILA*

  Nucleotide sequence: 1839 bp    

>T6CP259659 CP009538:2069350-2071188 [Burkholderia pseudomallei K96243] [TssF]
ATGGAAGAGTTGTTGCCGTATTACGAACGCGAACTGTCGTTTCTGCGGCGCTATTCGCTCGAATTCGCGAACCGTTACCC
GAAGATCGCCGCGCGTCTCGCCCAGACGGGCGAGCAGTGTGAGGATCCGCACGTCGAGCGGATGATCGAATCGTTCGCGC
TGCTCGGCGCGCGGATCAACAAGAAGCTCGACGACGAATATCCCGAGTTCACCGAAGCGCTCGTCGAAGTCCTCTACCCG
CACTATCTGCGGCCGTTCCCGTCATGCTCGATCGCGCAGTTCGGTGCGCCGCATGCGTTCGCGGAGCTCACCGAGCCGCG
GATCGTCGAGCGCGGCACCGAGCTGAAGAGCCGCGCGATTCGCGGCGTGCAGTGCCGGTTCCGCACCGCGTACGACGTGA
CGCTCGCGCCGATCCGGCTCGCCGATGCGCGCTACGGATCGGTCGCGGTGGCGCCCGCCGCAGCAAGGCTGCCCGGCAAC
GCGACGGGCGTGATCTCGATCGCGTTCGAATCGACGTCGCCGCAGCTCGATCTCGCCGCGCTGAAGCTCGGCAAGCTGCG
CGCGCATTTGCACGGCGAGCAATCGTTCGTCGCCGCGCTGGCCGATTGCCTGTTCGCGCACGCGCTCGCCTGCTACGTCG
AGCCCGATCGCGGCGGCCGCTGGATCGCGCTCGGCAAGACGCCGTTCGAGCACGCGGGCTTCGACGAGACCGACGCGCTG
ATCGACTATCCGGCCCGTTCGCATCCGGCCTATCGGCTGCTGACCGAATACTTCGCATTCCCGGATAAATTCAACTTCGT
CGATTTCGATCTGGGCGCGCTCGCGCGGCGCGCGGGGCCCTGCCGGCAGCTGACGCTGCACATCGCGCTGCGCGACGTGC
GCGGCGATTCGCATGTCGCGCGGCTGCTCGATCTGCTGAGCGCGAGCCATTTCCGGCTCTTCTGCACGCCGGTCGTGAAC
CTGTTCCGCCAGCACGGCGAGCCGATTCGGGTCGACCACCGGGCGGTGTCGTACCCGGTGATCGGCGATGCGCGCCGCGC
GTTCGCGTACGAGGTATATTCGATCGATTCGGTGCATCTCGTGCGGCAGCGCGCGGACCGCGAAACGCTCGTCGAATTCC
GGCCGTTCTATTCGCTGCATCACGGCGAAGCCGCGCAGGCCGGCCACTACTGGTTCGCGCGGCGCAACGACGACGTCGCG
CGCAAGAGCCCCGGCTACGAGACCGAGATTTCGGTCGTCGACGTCGACTTCGAGCCGGGCGCGCCGCAAACCGATACGTT
GAGCCTCGATCTCACCTGTACGAACCGCGACCTGCCCGCCGCGCTCGCAACGGGGCTCGACGGCGGCGATCTCTTCATCG
ACGGCGGCGAGCAGCCCGGCCCGATCGCGCTATTGCGCCGGCCGACGCCGAGCGCGCGCTTCGAGCGCGGCCACGCCGCG
CACTGGCGCCTCGTGTCGCATCTCGCGCTCAATCACGTGTCGCTTGCCGAAGAAGGGCTCGCCGCGCTGAAGGAAGCGCT
CGTGCTGTACGATCTGAGGCGCTCCGCGGTGTCGACGCGCCATATCGACGGGATCGTCGGCATCGAGCAGAAGAGCGCGG
TGCAATGGCTGCCGGGCAAGCCGTTCGCGACGTTCGTGCGCGGCGTCGAGATCCGGCTCGCGATCGACGACGAACATTTC
GTCGGCTCGAGCCTCGCGACGTTCGTGCGGATGATCGACGCGTTCTTCGGGCTGTACGTGCACCTCAACAGCTTTGTTCA
ACTGATCGTCGTGTCCAGGCGCACCGGCGAGGAGATCATGCGATGCAAACCGCGCAGCGGCGAATCGATCCTGGCGTAG