Detailed information of component protein


Summary

Component ID T6CP259658
Component protein type TssG
T6SS ID (Type) T6SS01006 experimental (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (367 a.a.); Nucleotide sequence (1101 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_1820
Coordinate (Strand) 2071152..2072252 (+)
NCBI ID AJX29478.1
GenBank CP009538
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1e-91 19..346
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-366 MQTAQRRIDPGVVERLLDEPHRFEFFQAVRLLETWFAKHDAPRHAASRPGEIVARRIGFRNTLSLGFPPSEIERAQSYDAAGAALKDDVRRNAALEAGALSRVELTPAFFGLLGGQGALPLHYTEQIIAREQLKRDHAAHAFFDVFSNRATALFYSAWKKYRLPLHYELDRDERYLPLLLALAGVSNDDARSTVQQGRGALLDEAIAGYALAARHRPVSAAYLQRTLSEYFRVPIRVEQFVGKWYDVPPDQLSVLGDVNVTLGATALVGERVWQRDMRARLVVGPLTKRDYEAFLPGEERAIALERMLTLLAGVTLEYEVSLVLRRAEVGASVLGAGARLGWDAFLCTREAGRDRADARYELHVIH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9890 - -


  Protein sequence: 367 a.a.    

>T6CP259658 CP009538:2071152-2072252 [Burkholderia pseudomallei K96243] [TssG]
MQTAQRRIDPGVVERLLDEPHRFEFFQAVRLLETWFAKHDAPRHAASRPGEIVARRIGFRNTLSLGFPPSEIERAQSYDA
AGAALKDDVRRNAALEAGALSRVELTPAFFGLLGGQGALPLHYTEQIIAREQLKRDHAAHAFFDVFSNRATALFYSAWKK
YRLPLHYELDRDERYLPLLLALAGVSNDDARSTVQQGRGALLDEAIAGYALAARHRPVSAAYLQRTLSEYFRVPIRVEQF
VGKWYDVPPDQLSVLGDVNVTLGATALVGERVWQRDMRARLVVGPLTKRDYEAFLPGEERAIALERMLTLLAGVTLEYEV
SLVLRRAEVGASVLGAGARLGWDAFLCTREAGRDRADARYELHVIH*

  Nucleotide sequence: 1101 bp    

>T6CP259658 CP009538:2071152-2072252 [Burkholderia pseudomallei K96243] [TssG]
ATGCAAACCGCGCAGCGGCGAATCGATCCTGGCGTAGTCGAGCGGCTGCTCGACGAGCCGCATCGCTTCGAGTTCTTTCA
GGCGGTGCGGCTGCTCGAGACCTGGTTCGCGAAGCACGATGCGCCGCGCCACGCGGCGAGCCGGCCGGGCGAGATCGTCG
CGCGGCGCATCGGCTTTCGCAATACGCTGTCGCTCGGCTTTCCGCCGAGCGAGATCGAGCGCGCGCAGTCGTACGACGCA
GCCGGCGCCGCGCTGAAGGACGACGTGCGGCGCAACGCGGCGCTCGAGGCGGGCGCGCTGTCGCGCGTCGAGCTCACGCC
GGCGTTCTTCGGGCTGCTGGGCGGCCAGGGCGCGCTGCCGCTGCATTACACCGAGCAGATCATCGCGCGTGAGCAACTGA
AGCGCGACCATGCCGCGCACGCGTTCTTCGATGTCTTCTCGAACCGCGCGACCGCGCTGTTCTATTCGGCATGGAAGAAG
TACCGTCTGCCGCTGCATTACGAACTCGACCGCGACGAGCGCTATCTGCCGCTCCTGCTCGCGCTCGCGGGCGTGTCGAA
CGACGACGCGCGCTCGACCGTGCAGCAGGGCCGCGGCGCGCTGCTCGACGAGGCGATCGCGGGCTATGCGCTCGCCGCGC
GGCATCGGCCGGTATCGGCCGCGTATCTGCAGCGCACGCTGTCCGAATATTTTCGCGTGCCGATCCGCGTCGAGCAGTTC
GTCGGCAAGTGGTACGACGTGCCGCCCGATCAATTGAGCGTGCTCGGCGACGTGAACGTGACGCTCGGCGCGACGGCGCT
CGTCGGCGAGCGCGTGTGGCAGCGCGACATGCGCGCGCGGCTCGTCGTCGGCCCGCTGACGAAGCGCGACTACGAGGCGT
TCCTGCCCGGCGAGGAGCGCGCGATCGCGCTCGAGCGGATGCTGACGCTGCTCGCGGGCGTGACGCTCGAATACGAGGTG
TCGCTCGTGCTGCGCCGCGCGGAAGTCGGCGCGAGCGTGCTCGGCGCGGGCGCGCGGCTCGGCTGGGACGCGTTTCTCTG
CACGCGCGAAGCCGGGCGCGATCGTGCGGACGCGCGCTACGAGCTGCATGTCATTCATTGA