Detailed information of component protein


Summary

Component ID T6CP259656
Component protein type TssA
T6SS ID (Type) T6SS01006 experimental (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (374 a.a.); Nucleotide sequence (1122 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_1822
Coordinate (Strand) 2075045..2076166 (+)
NCBI ID AJX28849.1
GenBank CP009538
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 6.1e-37 9..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-373 MPTNLTELLTPISEASPCGDDLLFSAEFDAIQHARKFDDPSLDQGEWITDIKEADWGFVVEQASALLRERTKDLRLAVWLTEALAIEDGIGGLTQGYTLLTSLCRQFWDHVHPLPDGDDAEYRLGNVAWLAGRTVDLLRAVPLTDGAANAFSELDWDVAQHVAQAIRRDPEQASEIARGKPSVEQIEASKRMTPVAFYARLLGELKAFQAALDALEQELDGRAGDAAPSFRQARDAYETVYRLAERFAKEQGYSADAQPQAVAPPAPSERAEPSFKTPLHSEEPVPRHAHAPSAPAPIVIAGIQNRAQAVEQLRAVAKYFRGTEPHSPVAYLADKAAEWADMPLHQWLASVVKDDGSLAHIRELLGLKPDDNA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9818 - -


  Protein sequence: 374 a.a.    

>T6CP259656 CP009538:2075045-2076166 [Burkholderia pseudomallei K96243] [TssA]
MPTNLTELLTPISEASPCGDDLLFSAEFDAIQHARKFDDPSLDQGEWITDIKEADWGFVVEQASALLRERTKDLRLAVWL
TEALAIEDGIGGLTQGYTLLTSLCRQFWDHVHPLPDGDDAEYRLGNVAWLAGRTVDLLRAVPLTDGAANAFSELDWDVAQ
HVAQAIRRDPEQASEIARGKPSVEQIEASKRMTPVAFYARLLGELKAFQAALDALEQELDGRAGDAAPSFRQARDAYETV
YRLAERFAKEQGYSADAQPQAVAPPAPSERAEPSFKTPLHSEEPVPRHAHAPSAPAPIVIAGIQNRAQAVEQLRAVAKYF
RGTEPHSPVAYLADKAAEWADMPLHQWLASVVKDDGSLAHIRELLGLKPDDNA*

  Nucleotide sequence: 1122 bp    

>T6CP259656 CP009538:2075045-2076166 [Burkholderia pseudomallei K96243] [TssA]
ATGCCGACCAACCTCACCGAGCTGCTGACGCCGATCAGCGAAGCGTCGCCGTGCGGCGACGATCTCCTGTTCTCCGCCGA
ATTCGACGCGATCCAGCACGCGCGCAAGTTCGACGATCCGTCGCTCGACCAGGGCGAATGGATCACCGATATCAAGGAAG
CGGACTGGGGCTTCGTCGTCGAGCAAGCGAGCGCGCTGTTGCGCGAGCGCACGAAGGATCTGCGGCTCGCGGTATGGCTG
ACCGAGGCGCTCGCGATCGAGGACGGCATCGGTGGGCTCACGCAGGGCTACACGCTGCTCACGAGCCTCTGCCGGCAGTT
CTGGGACCACGTGCATCCGCTGCCCGACGGCGACGACGCCGAATACCGGCTCGGCAACGTCGCGTGGCTCGCCGGGCGCA
CGGTCGATCTGCTGCGCGCGGTGCCGCTCACCGACGGCGCGGCGAATGCGTTCAGCGAGCTCGACTGGGACGTCGCGCAA
CACGTCGCGCAGGCGATCCGGCGCGATCCCGAACAGGCGAGCGAGATCGCGCGCGGCAAGCCGTCCGTCGAGCAGATCGA
GGCGTCGAAGCGGATGACGCCCGTGGCGTTCTACGCGCGGCTGCTCGGCGAGCTGAAAGCGTTCCAGGCGGCGCTCGACG
CGCTCGAGCAGGAACTCGACGGGCGGGCGGGCGACGCGGCGCCGAGCTTCCGGCAGGCGCGCGACGCGTACGAAACCGTC
TACCGGCTCGCCGAACGCTTCGCGAAGGAGCAGGGCTACTCGGCCGACGCGCAGCCGCAGGCCGTCGCGCCGCCCGCGCC
GAGCGAGCGCGCGGAGCCGAGCTTCAAGACGCCGCTTCATTCGGAGGAACCCGTGCCGAGACACGCACACGCGCCGTCCG
CGCCCGCGCCGATCGTGATCGCCGGCATTCAGAATCGCGCGCAGGCCGTCGAGCAACTGCGCGCGGTCGCGAAATATTTC
CGCGGAACCGAGCCGCACAGCCCCGTCGCGTATCTCGCCGACAAGGCGGCCGAATGGGCGGACATGCCGCTGCATCAATG
GCTTGCGTCGGTCGTCAAGGACGACGGCTCGCTCGCGCATATCCGCGAGCTGCTCGGCCTGAAGCCGGACGATAACGCGT
GA