Detailed information of component protein


Summary

Component ID T6CP259652
Component protein type TssK
T6SS ID (Type) T6SS01262 experimental (Type i1)
Strain Vibrio parahaemolyticus strain 12-297/B
Replicon chromosome
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) B5C30_RS15385
Coordinate (Strand) 37973..39298 (+)
NCBI ID WP_005480714.1
RefSeq NZ_MYFG01000475
Uniprot ID Q87PT8_VIBPA, A0A0L8S0C3_VIBPH
KEGG ID vpa:VP1413
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.7e-136 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MSLYNPVVWQDGMFMKPQHFQQLDRSQSKLSSMLSANASPLHWGIKRLEINSQLLALGKIGITRAEGILQDRTPFELPLLAELPEVKDVDPSIADKVVYLCCPLPSERSELFGTKKDGARYTLESQEAVDACYDSEDMANIVVGKLNFCLMYDHEDKSAYTSIPILKISEVKPDGSVILDESFIPTCIDIHASTVLNKFATEFASMLKHRAESIVQRLGVVDQQGVSSVSDFMLLQALNRYEPLFWHFASAEGVHPESFYRILLQAEGELSTLCSASRRPIEFTKYNHGDLTSCLSRTLDSAKMTLSVMSEQRAIPLTLKDQNYGIRTAAIPDSKIIDTTTFILAVKADVTLDVLHTQFVSQTKIGSIDNIRDLINLQLPGIEIKPMPVVPRALPYHAGYTYFELDKTGEEWAALKNTAAIAVHVAGDFANLSLQLWAVRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9889 - -


  Protein sequence: 442 a.a.    

>T6CP259652 NZ_MYFG01000475:37973-39298 [Vibrio parahaemolyticus] [TssK]
MSLYNPVVWQDGMFMKPQHFQQLDRSQSKLSSMLSANASPLHWGIKRLEINSQLLALGKIGITRAEGILQDRTPFELPLL
AELPEVKDVDPSIADKVVYLCCPLPSERSELFGTKKDGARYTLESQEAVDACYDSEDMANIVVGKLNFCLMYDHEDKSAY
TSIPILKISEVKPDGSVILDESFIPTCIDIHASTVLNKFATEFASMLKHRAESIVQRLGVVDQQGVSSVSDFMLLQALNR
YEPLFWHFASAEGVHPESFYRILLQAEGELSTLCSASRRPIEFTKYNHGDLTSCLSRTLDSAKMTLSVMSEQRAIPLTLK
DQNYGIRTAAIPDSKIIDTTTFILAVKADVTLDVLHTQFVSQTKIGSIDNIRDLINLQLPGIEIKPMPVVPRALPYHAGY
TYFELDKTGEEWAALKNTAAIAVHVAGDFANLSLQLWAVRL*

  Nucleotide sequence: 1326 bp    

>T6CP259652 NZ_MYFG01000475:37973-39298 [Vibrio parahaemolyticus] [TssK]
ATGTCTTTATACAATCCAGTTGTTTGGCAAGATGGAATGTTCATGAAGCCGCAGCACTTTCAGCAACTCGATCGTTCACA
AAGTAAACTGTCGAGCATGCTGAGCGCAAATGCATCACCTTTGCATTGGGGCATTAAGCGCTTAGAGATTAACTCGCAAC
TACTGGCGTTGGGCAAAATTGGTATCACTCGTGCTGAAGGTATTCTTCAAGACAGAACACCATTTGAGCTGCCGCTGCTG
GCTGAACTTCCAGAAGTGAAAGACGTTGATCCTTCGATTGCTGACAAAGTGGTTTACCTTTGTTGTCCGTTACCTTCTGA
GCGCTCTGAACTATTCGGCACCAAGAAAGACGGTGCACGTTACACGCTAGAATCTCAAGAGGCGGTTGACGCTTGTTATG
ATTCAGAAGACATGGCAAATATCGTAGTCGGTAAGCTTAACTTCTGCTTGATGTATGACCATGAAGATAAGAGTGCTTAC
ACATCAATTCCAATTCTGAAGATCTCAGAAGTGAAGCCAGACGGCAGTGTTATCTTGGATGAAAGCTTTATCCCGACTTG
TATCGATATTCATGCCTCTACCGTGCTAAACAAGTTCGCAACCGAGTTTGCCTCTATGCTGAAACACCGCGCAGAATCCA
TCGTTCAGCGCCTAGGCGTGGTTGACCAGCAAGGCGTATCTTCAGTTTCTGATTTCATGTTGCTGCAAGCTCTAAACCGA
TACGAGCCGCTATTCTGGCACTTTGCGAGCGCAGAAGGGGTTCATCCTGAATCGTTTTATCGCATTCTTCTTCAAGCGGA
AGGTGAGCTTTCGACTTTGTGTTCAGCATCTCGTCGACCAATCGAGTTCACCAAGTACAACCATGGCGACCTAACCAGCT
GTCTATCGCGTACATTGGATAGTGCGAAGATGACACTAAGTGTGATGTCTGAGCAGCGTGCAATCCCACTGACGTTGAAA
GACCAAAACTACGGTATTAGAACGGCAGCGATTCCAGACAGTAAGATTATCGACACCACGACCTTTATTCTTGCGGTTAA
AGCCGACGTTACTTTGGATGTTCTTCACACCCAGTTTGTTAGTCAAACGAAGATCGGCTCTATCGATAACATTCGTGACT
TGATTAACCTGCAACTGCCGGGCATCGAGATTAAACCAATGCCAGTCGTACCTCGCGCATTGCCTTACCACGCAGGTTAC
ACCTACTTCGAACTGGATAAGACTGGCGAAGAGTGGGCAGCACTGAAAAACACGGCTGCAATTGCGGTTCACGTAGCCGG
TGACTTTGCTAACTTGTCATTGCAACTGTGGGCCGTTCGTCTATGA