Detailed information of component protein


Summary

Component ID T6CP259651
Component protein type TssJ
T6SS ID (Type) T6SS01262 experimental (Type i1)
Strain Vibrio parahaemolyticus strain 12-297/B
Replicon chromosome
Sequence Protein sequence (167 a.a.); Nucleotide sequence (501 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) B5C30_RS15380
Coordinate (Strand) 37461..37961 (+)
NCBI ID WP_011105829.1
RefSeq NZ_MYFG01000475
Uniprot ID Q87PT9_VIBPA, A0A227JG17_VIBPH
KEGG ID vpa:VP1412
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 6.7e-31 34..150

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-166 MRSIAILLGCALLSGCAMWDQFKESTGITPETSSIELVIEASSVLNVREGGQSSPVILRVHELTSPVLFRSLDFFALFENDKASLGDEYIKRYEYQMQPGEKIHEFLELDPATRAVGFSVAFRDIDGSSWRKVEVIEEKSEYYIKLKLEGSELISDNTRGIEQVYF



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9975 pos: 15-16. LSG-CA. MRSIAILLGCALLSG



  Protein sequence: 167 a.a.    

>T6CP259651 NZ_MYFG01000475:37461-37961 [Vibrio parahaemolyticus] [TssJ]
MRSIAILLGCALLSGCAMWDQFKESTGITPETSSIELVIEASSVLNVREGGQSSPVILRVHELTSPVLFRSLDFFALFEN
DKASLGDEYIKRYEYQMQPGEKIHEFLELDPATRAVGFSVAFRDIDGSSWRKVEVIEEKSEYYIKLKLEGSELISDNTRG
IEQVYF*

  Nucleotide sequence: 501 bp    

>T6CP259651 NZ_MYFG01000475:37461-37961 [Vibrio parahaemolyticus] [TssJ]
ATGCGTAGTATTGCAATATTGCTCGGATGCGCCTTGCTATCCGGTTGTGCCATGTGGGATCAATTTAAAGAATCAACAGG
CATCACGCCTGAAACGTCCTCGATTGAGTTGGTGATTGAGGCGTCTTCGGTTCTAAATGTTCGTGAAGGCGGACAATCCT
CTCCGGTTATTTTGCGAGTTCACGAACTGACGTCACCAGTGTTGTTTCGTAGCTTAGACTTCTTCGCATTGTTTGAGAAC
GATAAAGCATCACTGGGTGATGAATACATCAAACGTTATGAATACCAAATGCAGCCTGGTGAAAAGATCCACGAATTTTT
GGAACTCGACCCAGCAACCCGTGCGGTTGGATTCTCAGTCGCGTTTCGCGATATTGACGGTTCTTCTTGGCGTAAAGTCG
AAGTGATTGAAGAGAAGAGCGAGTACTACATAAAACTCAAGTTAGAAGGCAGTGAGTTAATTTCTGACAACACTCGCGGC
ATTGAACAAGTTTACTTTTAA