Detailed information of component protein


Summary

Component ID T6CP259648
Component protein type TssG
T6SS ID (Type) T6SS01262 experimental (Type i1)
Strain Vibrio parahaemolyticus strain 12-297/B
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) B5C30_RS15350
Coordinate (Strand) 28572..29570 (+)
NCBI ID WP_025542747.1
RefSeq NZ_MYFG01000475
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.2e-85 10..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 MINTLSEKSNEFSFYQAVLLLEKHYQFEPNSNFVAVGENKYFHQERIEFSVSPNLCFPKSDMEFIVHMERSGQQYSRVETNFLGLHGSSSPLPASYTEKLTGREPDDNPVKDFFDFFHNRYTSLLYRVWKKYRYHVQYQSGATDAFSGRMLHLAGLSGVMQDCGVAELDRAKVLSYVNQLSTRTRSPKLISGIVSHYFSLPSVRIEEWVYRRVEIADSQRNKLNRANCILGQSFHLGQSIADLNGKFNLCIDDIDFETFKQFSYEGELHKTLVGLMRFILRDPMSWDLKLTVNLDSIPKNQLGNGEGNNLGQTFWLGNPTDEDVKIRVIGSI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9971 - -


  Protein sequence: 333 a.a.    

>T6CP259648 NZ_MYFG01000475:28572-29570 [Vibrio parahaemolyticus] [TssG]
MINTLSEKSNEFSFYQAVLLLEKHYQFEPNSNFVAVGENKYFHQERIEFSVSPNLCFPKSDMEFIVHMERSGQQYSRVET
NFLGLHGSSSPLPASYTEKLTGREPDDNPVKDFFDFFHNRYTSLLYRVWKKYRYHVQYQSGATDAFSGRMLHLAGLSGVM
QDCGVAELDRAKVLSYVNQLSTRTRSPKLISGIVSHYFSLPSVRIEEWVYRRVEIADSQRNKLNRANCILGQSFHLGQSI
ADLNGKFNLCIDDIDFETFKQFSYEGELHKTLVGLMRFILRDPMSWDLKLTVNLDSIPKNQLGNGEGNNLGQTFWLGNPT
DEDVKIRVIGSI*

  Nucleotide sequence: 999 bp    

>T6CP259648 NZ_MYFG01000475:28572-29570 [Vibrio parahaemolyticus] [TssG]
ATGATTAATACACTTTCTGAAAAATCGAATGAGTTTAGTTTTTATCAAGCGGTTCTTTTGCTCGAGAAGCACTACCAGTT
TGAACCAAACTCTAACTTTGTCGCCGTGGGAGAGAACAAATATTTTCACCAGGAGCGAATTGAGTTCAGCGTGTCGCCTA
ATCTATGCTTCCCTAAGAGTGATATGGAATTTATCGTTCATATGGAACGAAGTGGGCAGCAGTATTCACGAGTCGAAACG
AACTTCCTTGGTTTGCATGGTTCGAGCTCTCCATTGCCTGCCTCTTATACGGAGAAACTTACTGGGCGTGAACCTGATGA
CAACCCGGTAAAAGATTTCTTTGATTTCTTCCATAATCGCTACACCAGTTTGCTCTATCGTGTCTGGAAGAAGTACCGTT
ATCATGTACAGTACCAAAGTGGTGCGACAGACGCTTTTTCTGGACGGATGCTGCACTTAGCTGGTTTATCAGGTGTTATG
CAAGATTGTGGTGTTGCAGAGTTAGACCGCGCAAAAGTCCTGTCTTACGTTAATCAACTGTCGACACGTACACGTTCTCC
TAAGTTAATTTCAGGTATCGTTTCACATTATTTCTCACTTCCTAGCGTTCGTATCGAAGAATGGGTTTATCGCCGTGTGG
AGATTGCAGACAGTCAGCGAAATAAACTCAATCGAGCCAATTGCATATTAGGTCAAAGCTTTCATTTAGGGCAGAGTATC
GCAGATTTAAATGGTAAGTTTAATCTTTGCATTGATGACATTGACTTCGAGACATTTAAGCAGTTTTCTTACGAAGGTGA
GTTGCATAAAACGTTGGTTGGTTTAATGCGATTCATCTTGCGTGACCCGATGTCTTGGGATCTCAAACTGACAGTTAATC
TCGACAGCATTCCAAAGAACCAACTTGGCAATGGAGAAGGGAACAACTTAGGGCAGACATTTTGGTTAGGCAACCCCACA
GATGAAGATGTGAAGATCAGAGTAATTGGTAGCATTTAG