Detailed information of component protein


Summary

Component ID T6CP259647
Component protein type TssF
T6SS ID (Type) T6SS01262 experimental (Type i1)
Strain Vibrio parahaemolyticus strain 12-297/B
Replicon chromosome
Sequence Protein sequence (583 a.a.); Nucleotide sequence (1749 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) B5C30_RS15345
Coordinate (Strand) 26827..28575 (+)
NCBI ID WP_005480666.1
RefSeq NZ_MYFG01000475
Uniprot ID Q87PU6_VIBPA, A0A0L7YGB9_VIBPH
KEGG ID vpa:VP1405
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.9e-157 5..579
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-582 MSNSKYFQDELTYLRESGSEFAKYHPKLTHFLSEGTFDPDVERLLEGFAFLTGRIREKIDDELPELTQSLMTLLWPHYMRSIPSLCISELKPHTGSVTEKTVVKRGAEMASEQVEGTQCLFRTCYDVNLYPITITNIEQTNSRTSSAIDVTLSTEHGLELSRIGLDTLRLHLHGEIHITRTVFLWLFRYLDYVELDVGGGYKHRLGPEYVKPVGHEEDEALLPYSKNSFAGYRLLQELFSLPDKFMFFDITGLEWLKGIPQRSTVKIKFHFKRALPSEVVLKDKHLRLHCTPAVNLFEKDGDPIRLEHRRNEYKVRPQSNTQEHYEVYSIEQVESWSKDERRRKPLIEFESFEHQINQRDKREFYKSKVGERVSGRGLERYISFHTHNGDIADLGTETVLMKLQCSNADLAERLSVGDITYATHKSPTYATFKNITKPTQSVSPQVNGELQWQLIANMSLNYLSLANIDVLKVLLSTYDFHSRVDRQAHRASIHRLDGIVSSEMKPIDRVFRGVSVRGNQFKLVTNSKFFVNEGDMFLMATVLNEFIRLYSSVNSFTELEVFDEATGEVYNWKSLIGQQTIL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -


  Protein sequence: 583 a.a.    

>T6CP259647 NZ_MYFG01000475:26827-28575 [Vibrio parahaemolyticus] [TssF]
MSNSKYFQDELTYLRESGSEFAKYHPKLTHFLSEGTFDPDVERLLEGFAFLTGRIREKIDDELPELTQSLMTLLWPHYMR
SIPSLCISELKPHTGSVTEKTVVKRGAEMASEQVEGTQCLFRTCYDVNLYPITITNIEQTNSRTSSAIDVTLSTEHGLEL
SRIGLDTLRLHLHGEIHITRTVFLWLFRYLDYVELDVGGGYKHRLGPEYVKPVGHEEDEALLPYSKNSFAGYRLLQELFS
LPDKFMFFDITGLEWLKGIPQRSTVKIKFHFKRALPSEVVLKDKHLRLHCTPAVNLFEKDGDPIRLEHRRNEYKVRPQSN
TQEHYEVYSIEQVESWSKDERRRKPLIEFESFEHQINQRDKREFYKSKVGERVSGRGLERYISFHTHNGDIADLGTETVL
MKLQCSNADLAERLSVGDITYATHKSPTYATFKNITKPTQSVSPQVNGELQWQLIANMSLNYLSLANIDVLKVLLSTYDF
HSRVDRQAHRASIHRLDGIVSSEMKPIDRVFRGVSVRGNQFKLVTNSKFFVNEGDMFLMATVLNEFIRLYSSVNSFTELE
VFDEATGEVYNWKSLIGQQTIL*

  Nucleotide sequence: 1749 bp    

>T6CP259647 NZ_MYFG01000475:26827-28575 [Vibrio parahaemolyticus] [TssF]
TTGAGTAATAGTAAATACTTTCAAGATGAACTCACATATTTGCGCGAATCGGGTAGTGAGTTTGCCAAATATCATCCGAA
GTTAACTCACTTTCTCTCTGAAGGAACATTCGACCCAGATGTAGAGCGATTGCTGGAAGGTTTCGCTTTTCTGACTGGAC
GTATTCGAGAGAAGATAGATGACGAACTGCCAGAACTGACGCAATCTCTGATGACTTTGCTGTGGCCGCATTACATGCGT
TCAATTCCATCTTTGTGCATCAGCGAGCTAAAACCACATACGGGAAGTGTTACTGAAAAAACGGTGGTAAAACGTGGCGC
AGAAATGGCCAGTGAGCAAGTGGAGGGCACGCAATGTCTTTTCCGCACTTGCTACGATGTGAATCTGTACCCAATCACGA
TCACCAACATTGAACAAACCAACAGCCGCACCAGTTCAGCGATTGATGTGACGTTGTCGACGGAGCATGGCCTAGAGCTG
TCTCGAATTGGTTTAGATACGTTGCGTTTGCACTTGCATGGTGAGATTCATATTACCCGCACTGTCTTCCTCTGGCTGTT
CCGTTACTTGGATTACGTGGAGTTGGATGTCGGTGGCGGCTATAAACATCGTTTAGGGCCAGAATATGTTAAGCCGGTAG
GGCATGAAGAAGACGAAGCGCTTCTGCCTTACAGCAAAAATTCATTCGCGGGTTATCGTTTGCTGCAAGAATTATTCTCT
TTGCCAGACAAGTTTATGTTCTTCGACATTACAGGTTTGGAGTGGCTAAAGGGTATTCCACAACGAAGCACAGTGAAAAT
CAAATTTCACTTTAAACGCGCATTGCCGTCAGAGGTTGTACTTAAAGATAAGCACCTAAGGTTGCACTGCACGCCGGCGG
TGAATTTGTTTGAAAAAGATGGCGACCCAATTCGTTTGGAGCACCGCCGTAACGAATACAAAGTCCGTCCTCAAAGTAAT
ACGCAAGAGCACTATGAAGTGTATTCCATTGAGCAAGTTGAGAGTTGGAGCAAAGACGAGCGTCGCCGTAAACCGTTAAT
TGAATTCGAATCGTTCGAGCATCAAATCAACCAACGAGACAAGCGAGAATTCTACAAGTCGAAGGTAGGAGAGCGTGTTA
GTGGAAGAGGGTTAGAGCGCTATATCTCGTTCCACACTCATAATGGTGATATTGCGGATTTAGGTACGGAAACCGTACTC
ATGAAACTGCAATGCAGTAACGCTGATTTGGCCGAACGTCTTTCGGTCGGCGACATTACTTACGCGACCCACAAATCGCC
AACGTATGCGACATTTAAAAACATCACCAAGCCAACACAATCGGTAAGCCCACAGGTAAACGGCGAGCTTCAATGGCAGT
TGATTGCCAATATGTCGCTCAATTATTTGTCTTTGGCAAACATTGATGTATTAAAAGTGCTGCTCTCGACCTATGACTTT
CATTCTCGTGTTGACAGACAAGCTCACCGAGCATCGATTCACCGACTCGATGGCATTGTATCGTCAGAGATGAAACCAAT
TGACCGTGTATTCCGTGGCGTGTCTGTGCGTGGTAACCAGTTCAAGCTAGTAACCAACTCTAAGTTCTTCGTAAATGAAG
GCGATATGTTCCTGATGGCAACGGTACTGAACGAATTCATCCGTTTGTATTCGAGTGTAAACTCCTTTACGGAGCTAGAA
GTATTTGATGAGGCAACCGGTGAAGTATACAACTGGAAAAGCTTAATCGGGCAGCAGACGATTCTATGA